Immediate-Early Genes as Influencers in Genetic Networks and their Role in Alzheimer’s Disease

Abstract

Abstract/SummaryImmediate-early genes (IEGs) are a class of activity-regulated genes (ARGs) that are transiently and rapidly activated in the absence of de novo protein synthesis in response to neuronal activity. We explored the role of IEGs in genetic networks to pinpoint potential drug targets for Alzheimer’s disease (AD). Using a combination of network analysis and genome-wide association study (GWAS) summary statistics we show that (1) IEGs exert greater topological influence across different human and mouse gene networks compared to other ARGs, (2) ARGs are sparsely involved in diseases and significantly more mutational constrained compared to non-ARGs, (3) Many AD-linked variants are in ARGs gene regions, mainly inMARK4near FOSB, with an AD risk eQTL that increasesMARK4expression in cortical areas, (4)MARK4holds an influential place in a dense AD multi-omic network and a high AD druggability score. Our work on IEGs’ influential network role is a valuable contribution to guiding interventions for diseases marked by dysregulation of their downstream targets and highlightsMARK4as a promising underexplored AD-target.HighlightsImmediate-early genes are topologically influential in brain genetic networks in mouse and human.Activity-regulated Genes (ARGs) are highly constrained with sparse gene-disease relevance.There are several AD-associated variants in ARGs gene regions, mainly inMARK4nearFOSB.GWAS and network analysis of ARG’s pinpointMARK4as a promising underexplored AD target.