Characterization and diversification of AraC/XylS family regulators guided by transposon sequencing

Abstract

AbstractIn this study, we explored the development of engineered inducible systems. Publicly available data from previous transposon sequencing assays were used to identify regulators of metabolism inPseudomonas putidaKT2440. For the AraC-family regulators (AFRs) represented in this data, we posited AFR/promoter/inducer groupings. Eleven promoters were characterized for a response to their proposed inducers inP. putida, and the resultant data were used to create and test nine two-plasmid sensor systems inE. coli. Several of these were further developed into a palette of single-plasmid inducible systems. From these experiments, we observed an unreported inducer response from a previously characterized AFR, demonstrated that the addition of aP. putidatransporter improved the sensor dynamics of an AFR inE. coli, and identified an uncharacterized AFR with a novel potential inducer specificity. Finally, targeted mutations in an AFR, informed by structural predictions, enabled further diversification of these inducible plasmids.Graphical Abstract