A prognostic molecular signature of hepatic steatosis is spatially heterogeneous and dynamic in human liver

Author:

Perry Andrew S.ORCID,Hadad Niran,Chatterjee Emeli,Ramos Maria Jimenez,Farber-Eger Eric,Roshani Rashedeh,Stolze Lindsay K.,Zhao Shilin,Martens Liesbet,Kendall Timothy J.,Thone Tinne,Amancherla Kaushik,Bailin Samuel,Gabriel Curtis L.,Koethe John,Carr J. Jeffrey,Terry James Greg,Freedman Jane,Tanriverdi Kahraman,Alsop Eric,Keuren-Jensen Kendall Van,Sauld John F.K.,Mahajan Gautam,Khan Sadiya,Colangelo Laura,Nayor Matthew,Fisher-Hoch Susan,McCormick Joseph,North Kari E.,Below Jennifer,Wells Quinn,Abel Dale,Kalhan Ravi,Scott Charlotte,Guilliams Martin,Fallowfield Jonathan A.,Banovich Nicholas E.,Das Saumya,Shah Ravi

Abstract

SUMMARYMetabolic dysfunction-associated steatotic liver disease (MASLD) prevalence is increasing in parallel with an obesity pandemic, calling for novel strategies for prevention and treatment. We defined a circulating proteome of human MASLD across ≈7000 proteins in ≈5000 individuals from diverse, at-risk populations across the metabolic health spectrum, demonstrating reproducible diagnostic performance and specifying both known and novel metabolic pathways relevant to MASLD (central carbon and amino acid metabolism, hepatocyte regeneration, inflammation, fibrosis, insulin sensitivity). A parsimonious proteomic signature of MASLD was associated with a protection from MASLD and its related multi-system metabolic consequences in >26000 free-living individuals, with an additive effect to polygenic risk. The MASLD proteome was encoded by genes that demonstrated transcriptional enrichment in liver, with spatial transcriptional activity in areas of steatosis in human liver biopsy and dynamicity for select targets in human liver across stages of steatosis. We replicated several top relations from proteomics and spatial tissue transcriptomics in a humanized “liver-on-a-chip” model of MASLD, highlighting the power of a full translational approach to discovery in MASLD. Collectively, these results underscore utility of blood-based proteomics as a dynamic “liquid biopsy” of human liver relevant to clinical biomarker and mechanistic applications.

Publisher

Cold Spring Harbor Laboratory

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