Abstract
AbstractApplications of molecular phylogenetic approaches have uncovered evidence of hybridization across numerous clades of life, yet the environmental factors responsible for driving opportunities for hybridization remain obscure. Verbal models implicating geographic range shifts that brought species together during the Pleistocene have often been invoked, but quantitative tests using paleoclimatic data are needed to validate these models. Here, we produce a phylogeny for Heuchereae, a clade of 15 genera and 83 species in Saxifragaceae, with complete sampling of recognized species, using 277 nuclear loci and nearly complete chloroplast genomes. We then employ an improved framework with a coalescent simulation approach to test and ultimately confirm previous hybridization hypotheses and identify one new intergeneric hybridization event. Focusing on the North American distribution of Heuchereae, we introduce and implement a newly developed approach to reconstruct potential past distributions for ancestral lineages across all species in the clade and across a paleoclimatic record extending from the late Pliocene. Time calibration based on both nuclear and chloroplast trees recovers a mid- to late-Pleistocene date for most inferred hybridization events, a timeframe concomitant with repeated geographic range restriction into overlapping refugia. Our results indicate an important role for past episodes of climate change, and the contrasting responses of species with differing ecological strategies, in generating novel patterns of range contact among plant communities and therefore new opportunities for hybridization.
Publisher
Cold Spring Harbor Laboratory
Reference130 articles.
1. aTRAM 2.0: An improved, flexible locus assembler for NGS data;Evol. Bioinform. Online,2018
2. Altenhoff A.M. , Glover N.M. , Dessimoz C . 2019. Inferring orthology and paralogy. In: Anisimova M ., editor. Evolutionary Genomics: Statistical and Computational Methods. New York, NY: Springer New York. p. 149–175.
3. ETOPO1 1 arc-minute global relief model: Procedures, data sources and analysis;NOAA Technical Memorandum NESDIS NGDC,2009
4. A guide to carrying out a phylogenomic target sequence capture project;Front. Genet,2019
5. Hybridization of the Habitat
Cited by
1 articles.
订阅此论文施引文献
订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献