Coupling Day Length Data and Genomic Prediction tools for Predicting Time-Related Traits under Complex Scenarios

Abstract

AbstractGenomic selection (GS) has proven to be an efficient tool for predicting crop-rank performance of untested genotypes; however, when the traits have intermediate optima (phenology stages) this implementation might not be the most convenient. GS might deliver high rank correlations but incurring in serious bias. Days to heading (DTH) is a crucial development stage in rice for regional adaptability with significant impact in yield potential. The objectives of this research consisted in the development of a method that accurately predicts time related traits like DTH in unobserved environments. For this, we developed an implementation that incorporate day length information (DL) in the prediction process for two relevant scenarios: CV0, predicting tested genotypes in unobserved environments (C method); and CV00, predicting untested genotypes in unobserved environments (CB method). The use of DL has advantages over weather data since it can be determined in advance just by knowing the location and planting date. The proposed methods showed that DL information significantly helps to improve the predictive ability of DTH in unobserved environments. Under CV0, the C method returned an root-mean-square-error (RMSE) of 3.9 days, a Pearson Correlation (PC) of 0.98 and the differences between the predicted and observed environmental means (EMD) ranged between −4.95 and 4.67 days. For CV00, the CB method returned an RMSE of 7.3 days, a PC of 0.93 and the EMD ranged between −6.4 and 4.1 days while the conventional GS implementation produced an RMSE of 18.1 days, a PC of 0.41 and the EMD ranged between −31.5 and 28.7 days.