Repeatability and reproducibility of the wzi High Resolution Melting-based clustering analysis for Klebsiella pneumoniae typing

Abstract

AbstractAimsHigh Resolution Melting (HRM) is a fast closed-tube method for nucleotide variant scanning applicable for bacterial species identification or molecular typing. Recently a novel HRM-based method for Klebsiella pneumoniae typing has been proposed: it consists of an HRM protocol designed on the capsular wzi gene and an HRM-based algorithm of strains clustering. In this study, we evaluated the repeatability and reproducibility of this method.Methods and ResultsWe performed HRM typing of a set of K. pneumoniae strains, on three different instruments and by two different operators. The results showed that operators do not affect measured melting temperatures while different instruments can. Despite this, we found that strains clustering analysis remains perfectly consistent performing the analysis using the MeltingPlot tool separately on the data from the three instruments.ConclusionsThe HRM protocol under study was highly repeatable and thus reliable for large studies, even when several operators are involved.Significance and Impact of the StudyOur results show that the wzi-HRM protocol for K. pneumoniae typing is suitable for multicenter studies, even if different instruments are used.