Collinearity of alpha-helices or beta strands in membrane proteins causes a characteristic peak centred on 4.9 Å resolution in diffraction intensity profiles, inducing higher diffraction anisotropy

Abstract

AbstractDiffraction anisotropy is a phenomenon that impacts more specifically membrane proteins, compared to soluble ones, but the reasons for this discrepancy remained unclear. Often, it is referred to a difference in resolution limits between highest and lowest diffraction limits as a signature for anisotropy. We show in this article that there is no simple correlation between anisotropy and difference in resolution limits, with notably a substantial number of structures displaying various anisotropy with no difference in resolution limits. We further investigated diffraction intensity profiles, and observed a peak centred on 4.9Å resolution more predominant in membrane proteins. Since this peak is in the region corresponding to secondary structures, we investigated the influence of secondary structure ratio. We showed that secondary structure content has little influence on this profile, while secondary structure collinearity in membrane proteins correlate with a stronger peak. Finally, we could further show that the presence of this peak is linked to higher diffraction anisotropy.SynopsisMembrane protein diffraction anisotropy originates from a peak at 4.9 Å resolution in intensity profiles, due to secondary structure collinearity.