Unified real-time environmental-epidemiological data for multiscale modeling of the COVID-19 pandemic

Author:

Badr Hamada S.ORCID,Zaitchik Benjamin F.,Kerr Gaige H.,Nguyen Nhat-Lan H.,Chen Yen-Ting,Hinson Patrick,Colston Josh M.,Kosek Margaret N.,Dong Ensheng,Du Hongru,Marshall Maximilian,Nixon Kristen,Mohegh Arash,Goldberg Daniel L.,Anenberg Susan C.,Gardner Lauren M.

Abstract

AbstractAn impressive number of COVID-19 data catalogs exist. None, however, are optimized for data science applications, e.g., inconsistent naming and data conventions, uneven quality control, and lack of alignment between disease data and potential predictors pose barriers to robust modeling and analysis. To address this gap, we generated a unified dataset that integrates and implements quality checks of the data from numerous leading sources of COVID-19 epidemiological and environmental data. We use a globally consistent hierarchy of administrative units to facilitate analysis within and across countries. The dataset applies this unified hierarchy to align COVID-19 case data with a number of other data types relevant to understanding and predicting COVID-19 risk, including hydrometeorological data, air quality, information on COVID-19 control policies, and key demographic characteristics.

Publisher

Cold Spring Harbor Laboratory

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