Existence of SARS-CoV-2 RNA on ambient particulate matter samples: A nationwide study in Turkey

Author:

Kayalar Özgecan,Arı Akif,Babuççu Gizem,Konyalılar Nur,Doğan Özlem,Can Füsun,Şahin Ülkü A.,Gaga Eftade O.,Kuzu S. Levent,Arı Pelin E.,Odabası Mustafa,Taşdemir Yücel,Cindoruk S.Sıddık,Esen Fatma,Sakın Egemen,Çalışkan Burak,Tecer Lokman H.,Fıçıcı Merve,Altın Ahmet,Onat Burcu,Ayvaz Coşkun,Uzun Burcu,Saral Arslan,Döğeroğlu Tuncay,Malkoç Semra,Üzmez Özlem Ö.,Kunt Fatma,Aydın Senar,Kara Melik,Yaman Barış,Doğan Güray,Olgun Bihter,Dokumacı Ebru N.,Güllü Gülen,Uzunpınar Elif S.,Bayram Hasan

Abstract

AbstractCoronavirus disease 2019 (COVID-19) is caused by the SARS-CoV-2 virus and has been affecting the world since the end of 2019. Turkey is severely affected with the first case being reported on March 11th 2020. Ambient particulate matter (PM) samples in various size ranges were collected from 13 sites including urban and urban background locations and hospital gardens in 10 cities across Turkey between the 13th of May and the 14th of June, 2020 to investigate a possible presence of SARS-CoV-2 RNA on ambient PM. A total of 155 daily samples (TSP, n=80; PM2.5, n=33; PM2.5-10, n=23; PM10, n=19; and 6 size segregated, n=48) were collected using various samplers in each city. The N1 gene and RdRP gene expressions were analyzed for the presence of SARS-CoV-2 as suggested by the Centers for Disease Control and Prevention (CDC). According to RT-PCR and 3D-RT-PCR analysis, dual RdRP and N1 gene positivity were detected in 20 (9.8 %) of the samples. The highest percentage of virus detection on PM samples was from hospital gardens in Tekirdağ, Zonguldak, and İstanbul—especially in PM2.5 mode. Samples collected from two urban sites were also positive. Findings of this study have suggested that SARS-CoV-2 may be transported by ambient particles especially at sites close to the infection hot-spots. However, whether this has an impact on the spread of the virus infection remains to be determined.Significance StatementAlthough there are several studies reporting the existence of SARS-CoV-2 in indoor aerosols is established, it remains unclear whether the virus is transported by ambient atmospheric particles. The presence of the SARS-CoV-2 RNA in ambient particles collected from characteristic sites within various size ranges was investigated, and positive results were found in urban sites especially around Turkish hospitals. In this context, this study offers a new discussion on the transmission of the virus via ambient particles.

Publisher

Cold Spring Harbor Laboratory

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