Decoding neurobiological spike trains using recurrent neural networks; a case study with electrophysiological auditory cortex recordings

Abstract

AbstractRecent advancements in multielectrode methods and spike-sorting algorithms enable the in vivo recording of the activities of many neurons at a high temporal resolution. These datasets offer new opportunities in the investigation of the biological neural code, including the direct testing of specific coding hypotheses, but they also reveal the limitations of present decoder algorithms. Classical methods rely on a manual feature extraction step, resulting in a feature vector, like the firing rates of an ensemble of neurons. In this paper, we present a recurrent neural-network based decoder and evaluate its performance on experimental and artificial datasets. The experimental datasets were obtained by recording the auditory cortical responses of rats exposed to sound stimuli, while the artificial datasets represent preset encoding schemes. The task of the decoder was to classify the action potential timeseries according to the corresponding sound stimuli. It is illustrated that, depending on the coding scheme, the performance of the recurrent-network based decoder can exceed the performance of the classical methods. We also show how randomized copies of the training datasets can be used to reveal the role of candidate spike-train features. We conclude that artificial neural network decoders can be a useful alternative to classical population vector based techniques in studies of the biological neural code.