Mapping molecular HLA typing data to UNOS antigen equivalents for improved virtual crossmatch

Author:

Kaur Navchetan,Kransdorf Evan P.,Pando Marcelo J,Maiers Martin,Ray Bryan,Lee Jar-How,Lalli Peter,Murphey Cathi L,Bray Robert A,Gragert Loren

Abstract

AbstractBackgroundVirtual crossmatch utilizes HLA typing and antibody screen assay data as a part of organ offers in deceased donor allocation systems. Histocompatibility labs must convert molecular HLA typings to antigen equivalencies for entry into the United Network for Organ Sharing (UNOS) UNet system. While an Organ Procurement and Transplantation Network (OPTN) policy document provides general guidelines for conversion, the process is complex because no antigen mapping table is available. We present a UNOS antigen equivalency table for all IMGT/HLA alleles at the A, B, C, DRB1, DRB3/4/5, DQA1, and DQB1 loci.MethodsAn automated script was developed to generate a UNOS antigen equivalency table. Data sources used in the conversion algorithm included the World Marrow Donor Association(WMDA) antigen table, the HLA Dictionary, and UNOS-provided tables. To validate antigen mappings, we converted National Marrow Donor Program (NMDP) high resolution allele frequencies to antigen equivalents and compared with the UNOS Calculated Panel Reactive Antibodies (CPRA) reference panel.ResultsNormalized frequency similarity scores between independent NMDP and UNOS panels for 4 US population categories (Caucasian, Hispanic, African American and Asian/Pacific Islander) ranged from 0.85 to 0.97, indicating correct antigen mapping. An open source web application (ALLele to ANtigen (“ALLAN”)) and web services were also developed to map unambiguous and ambiguous HLA typing data to UNOS antigen equivalents based on NMDP population-specific allele frequencies (http://www.transplanttoolbox.org).ConclusionsThis tool sets a foundation for using molecular HLA typing to compute the virtual crossmatch and may aid in reducing typing discrepancies in UNet.

Publisher

Cold Spring Harbor Laboratory

Reference35 articles.

1. The IPD and IMGT/HLA database: allele variant databases

2. Nomenclature and Serology of HLA Class I and Class II Alleles

3. Using real data for a virtual crossmatch

4. Perception Versus Reality?: Virtual Crossmatch-How to Overcome Some of the Technical and Logistic Limitations

5. OPTN. Organ Procurement and Transplantation Network policies Effective date: 4/6/2017. https://optn.transplant.hrsa.gov/governance/policies/. Published 2017. Accessed December 12, 2017.

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