Early human lung immune cell development and its role in epithelial cell fate

Author:

Barnes Josephine L.ORCID,He PengORCID,Yoshida MasahiroORCID,Worlock Kaylee B.ORCID,Lindeboom Rik G.H.ORCID,Suo ChenquORCID,Pett J. PatrickORCID,Wilbrey-Clark AnnaORCID,Dann Emma,Mamanova LiraORCID,Richardson LauraORCID,Oliver Amanda J.ORCID,Pennycuick AdamORCID,Allen-Hyttinen JessicaORCID,Herczeg Iván T.,Hynds Robert E.ORCID,Teixeira Vitor H.,Haniffa Muzlifah,Lim KyungtaeORCID,Sun DaweiORCID,Rawlins Emma L.ORCID,Polanski Krzysztof,Lyons Paul A.ORCID,Marioni John C.ORCID,Tuong Zewen KelvinORCID,Clatworthy Menna R.ORCID,Reading James L.ORCID,Janes Sam M.ORCID,Teichmann Sarah A.ORCID,Meyer Kerstin B.ORCID,Nikolić Marko Z.ORCID

Abstract

AbstractDuring human development, lungs develop their roles of gas exchange and barrier function. Recent single cell studies have focused on epithelial and mesenchymal cell types, but much less is known about the developing lung immune cells, although the airways are a major site of mucosal immunity after birth. An open question is whether tissue-resident immune cells play a role in shaping the tissue as it developsin utero. In order to address this, we profiled lung immune cells using scRNAseq, smFISH and immunohistochemistry. At the embryonic stage, we observed an early wave of innate immune cells, including ILCs, NK, myeloid cells and lineage progenitors. By the canalicular stage, we detected naive T lymphocytes high in cytotoxicity genes, and mature B lymphocytes, including B1 cells. Our analysis suggests that fetal lungs provide a niche for full B cell maturation. Given the abundance of immune cells, we investigated their possible effect on epithelial maturation and found that IL-1β drives epithelial progenitor exit from self-renewal and differentiation to basal cellsin vitro.In vivo, IL-1β-producing myeloid cells were found adjacent to epithelial tips, suggesting that immune cells may direct the developing lung epithelium.

Publisher

Cold Spring Harbor Laboratory

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