Chromosome-scale genome assembly provides insights into rye biology, evolution, and agronomic potential-Reference-Cited by-同舟云学术

Chromosome-scale genome assembly provides insights into rye biology, evolution, and agronomic potential

Published:2019-12-12 Issue: Volume: Page:
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Rabanus-Wallace M. Timothy^ORCID,Hackauf Bernd^ORCID,Mascher Martin^ORCID,Lux Thomas^ORCID,Wicker Thomas^ORCID,Gundlach Heidrun^ORCID,Báez Mariana^ORCID,Houben Andreas^ORCID,Mayer Klaus F.X.^ORCID,Guo Liangliang,Poland Jesse^ORCID,Pozniak Curtis J.^ORCID,Walkowiak Sean^ORCID,Melonek Joanna^ORCID,Praz Coraline^ORCID,Schreiber Mona^ORCID,Budak Hikmet^ORCID,Heuberger Matthias,Steuernagel Burkhard^ORCID,Wulff Brande^ORCID,Börner Andreas^ORCID,Byrns Brook,Čížková Jana^ORCID,Fowler D. Brian,Fritz Allan,Himmelbach Axel^ORCID,Kaithakottil Gemy^ORCID,Keilwagen Jens^ORCID,Keller Beat^ORCID,Konkin David^ORCID,Larsen Jamie^ORCID,Li Qiang,Myśków Beata^ORCID,Padmarasu Sudharsan^ORCID,Rawat Nidhi^ORCID,Sesiz Uğur,Sezgi Biyiklioglu,Sharpe Andy^ORCID,Šimková Hana^ORCID,Small Ian^ORCID,Swarbreck David,Toegelová Helena,Tsvetkova Natalia^ORCID,Voylokov Anatoly V.^ORCID,Vrána Jan^ORCID,Bauer Eva^ORCID,Bolibok-Bragoszewska Hanna^ORCID,Doležel Jaroslav^ORCID,Hall Anthony^ORCID,Jia Jizeng^ORCID,Korzun Viktor^ORCID,Laroche André^ORCID,Ma Xue-Feng^ORCID,Ordon Frank^ORCID,Özkan Hakan^ORCID,Rakoczy-Trojanowska Monika^ORCID,Scholz Uwe^ORCID,Schulman Alan H.^ORCID,Siekmann Dörthe,Stojałowski Stefan^ORCID,Tiwari Vijay^ORCID,Spannagl Manuel^ORCID,Stein Nils^ORCID

Abstract

AbstractWe present a chromosome-scale annotated assembly of the rye (Secale cereale L. inbred line ‘Lo7’) genome, which we use to explore Triticeae genomic evolution, and rye’s superior disease and stress tolerance. The rye genome shares chromosome-level organization with other Triticeae cereals, but exhibits unique retrotransposon dynamics and structural features. Crop improvement in rye, as well as in wheat and triticale, will profit from investigations of rye gene families implicated in pathogen resistance, low temperature tolerance, and fertility control systems for hybrid breeding. We show that rye introgressions in wheat breeding panels can be characterised in high-throughput to predict the yield effects and trade-offs of rye chromatin.

Publisher

Cold Spring Harbor Laboratory

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