movedesign: Shiny R app to evaluate sampling design for animal movement studies

Author:

Silva InêsORCID,Fleming Christen H.ORCID,Noonan Michael J.ORCID,Fagan William F.,Calabrese Justin M.ORCID

Abstract

AbstractProjects focused on movement behavior and home range are commonplace, but beyond a focus on choosing appropriate research questions, there are no clear guidelines for such studies. Without these guidelines, designing an animal tracking study to produce reliable estimates of space-use and movement properties (necessary to answer basic movement ecology questions), is often done in anad hocmanner.We developed ‘movedesign’, a user-friendly Shiny application, which can be utilized to investigate the precision of three estimates regularly reported in movement and spatial ecology studies: home range area, speed, and distance traveled. Conceptually similar to statistical power analysis, this application enables users to assess the degree of estimate precision that may be achieved with a given sampling design;i.e., the choices regarding data resolution (sampling interval) and battery life (sampling duration).Leveraging the ‘ctmmRpackage, we utilize two methods proven to handle many common biases in animal movement datasets: autocorrelated Kernel Density Estimators (AKDE) and continuous-time speed and distance (CTSD) estimators. Longer sampling durations are required to reliably estimate home range areas via the detection of a sufficient number of home range crossings. In contrast, speed and distance estimation requires a sampling interval short enough to ensure that a statistically significant signature of the animal’s velocity remains in the data.This application addresses key challenges faced by researchers when designing tracking studies, including the trade-off between long battery life and high resolution of GPS locations collected by the devices, which may result in a compromise between reliably estimating home range or speed and distance. ‘movedesign’ has broad applications for researchers and decision-makers, supporting them to focus efforts and resources in achieving the optimal sampling design strategy for their research questions, prioritizing the correct deployment decisions for insightful and reliable outputs, while understanding the trade-off associated with these choices.

Publisher

Cold Spring Harbor Laboratory

Reference35 articles.

1. Bears without borders: Long-distance movement in human-dominated landscapes;Global Ecology and Conservation,2019

2. Territoriality and Home Range Concepts as Applied to Mammals

3. ctmm: An r package for analyzing animal relocation data as a continuous-time stochastic process;Methods in Ecology and Evolution,2016

4. Codling, E. A. , Plank, M. J. , & Benhamou, S. (2008). Random walk models in biology. Journal of The Royal Society Interface. https://doi.org/10.1098/rsif.2008.0014

5. Cross, P. C. , Bowers, J. A. , Hay, C. T. , Wolhuter, J. , Buss, P. , Hofmeyr, M. , Toit, J. T. , & Getz, W. M. (2016). Data from: Nonparameteric kernel methods for constructing home ranges and utilization distributions. Movebank data repository. https://doi.org/10.5441/001/1.j900f88t/1

Cited by 1 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3