Characterization of cross-species transcription and splicing from Penicillium to Saccharomyces cerevisiae

Author:

Lin Zhenquan1,Xu Kang1,Cai Guang1,Liu Yangqingxue1,Li Yi1,Zhang Zhihao1,Nielsen Jens123ORCID,Shi Shuobo1,Liu Zihe1

Affiliation:

1. College of Life Science and Technology, Beijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology, 100029 Beijing, China

2. Department of Biology and Biological Engineering, Chalmers University of Technology, SE-412 96 Gothenburg, Sweden

3. BioInnovation Institute, Ole Maaløes Vej 3, DK 2200 Copenhagen N, Denmark

Abstract

Abstract Heterologous expression of eukaryotic gene clusters in yeast has been widely used for producing high-value chemicals and bioactive secondary metabolites. However, eukaryotic transcription cis-elements are still undercharacterized, and the cross-species expression mechanism remains poorly understood. Here we used the whole expression unit (including original promoter, terminator, and open reading frame with introns) of orotidine 5′-monophosphate decarboxylases from 14 Penicillium species as a showcase, and analyzed their cross-species expression in Saccharomyces cerevisiae. We found that pyrG promoters from the Penicillium species could drive URA3 expression in yeast, and that inefficient cross-species splicing of Penicillium introns might result in weak cross-species expression. Thus, this study demonstrates cross-species expression from Penicillium to yeast, and sheds light on the opportunities and challenges of cross-species expression of fungi expression units and gene clusters in yeast without refactoring for novel natural product discovery.

Funder

National Key Research and Development Program

National Natural Science Foundation of China

Chinese Postdoctoral Science Foundation

Novo Nordisk Foundation

Knut and Alice Wallenberg Foundation

Publisher

Oxford University Press (OUP)

Subject

Applied Microbiology and Biotechnology,Biotechnology,Bioengineering

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