Big Data in Conservation Genomics: Boosting Skills, Hedging Bets, and Staying Current in the Field

Author:

Schweizer Rena M1ORCID,Saarman Norah2,Ramstad Kristina M3,Forester Brenna R4,Kelley Joanna L5ORCID,Hand Brian K16,Malison Rachel L6,Ackiss Amanda S7ORCID,Watsa Mrinalini8,Nelson Thomas C9,Beja-Pereira Albano101112,Waples Robin S13,Funk W Chris14,Luikart Gordon16

Affiliation:

1. Division of Biological Sciences, University of Montana, Missoula, MT

2. Department of Biology, Utah State University, Logan, UT

3. Department of Biology and Geology, University of South Carolina Aiken, Aiken, SC

4. Department of Biology, Colorado State University, Fort Collins, CO

5. School of Biological Sciences, Washington State University, Pullman, WA

6. Flathead Lake Biological Station, University of Montana, Polson, MT

7. Wisconsin Cooperative Fishery Research Unit, University of Wisconsin Stevens Point, Stevens Point, WI

8. San Diego Zoo Global, Escondido, CA

9. Embark Veterinary, Inc., Boston, MA

10. Centro de Investigação em Biodiversidade e Recursos Genéticos (CIBIO-UP), InBIO, Universidade do Porto, Vairão, Portugal

11. DGAOT, Faculty of Sciences, University of Porto, Porto, Portugal

12. Sustainable Agrifood Production Research Centre (GreenUPorto), Faculty of Sciences, University of Porto, Porto, Portugal

13. Northwest Fisheries Science Center, NOAA Fisheries, Seattle, WA

14. Department of Biology, Graduate Degree Program in Ecology, Colorado State University, Fort Collins, CO

Abstract

Abstract A current challenge in the fields of evolutionary, ecological, and conservation genomics is balancing production of large-scale datasets with additional training often required to handle such datasets. Thus, there is an increasing need for conservation geneticists to continually learn and train to stay up-to-date through avenues such as symposia, meetings, and workshops. The ConGen meeting is a near-annual workshop that strives to guide participants in understanding population genetics principles, study design, data processing, analysis, interpretation, and applications to real-world conservation issues. Each year of ConGen gathers a diverse set of instructors, students, and resulting lectures, hands-on sessions, and discussions. Here, we summarize key lessons learned from the 2019 meeting and more recent updates to the field with a focus on big data in conservation genomics. First, we highlight classical and contemporary issues in study design that are especially relevant to working with big datasets, including the intricacies of data filtering. We next emphasize the importance of building analytical skills and simulating data, and how these skills have applications within and outside of conservation genetics careers. We also highlight recent technological advances and novel applications to conservation of wild populations. Finally, we provide data and recommendations to support ongoing efforts by ConGen organizers and instructors—and beyond—to increase participation of underrepresented minorities in conservation and eco-evolutionary sciences. The future success of conservation genetics requires both continual training in handling big data and a diverse group of people and approaches to tackle key issues, including the global biodiversity-loss crisis.

Funder

National Science Foundation Dimensions of Biodiversity

National Aeronautics and Space Administration

American Genetic Association

National Science Foundation

Publisher

Oxford University Press (OUP)

Subject

Genetics (clinical),Genetics,Molecular Biology,Biotechnology

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