Reference genome of the bicolored carpenter ant, Camponotus vicinus

Author:

Ward Philip S1ORCID,Cash Elizabeth I2ORCID,Ferger Kailey2ORCID,Escalona Merly3ORCID,Sahasrabudhe Ruta4ORCID,Miller Courtney5ORCID,Toffelmier Erin56ORCID,Fairbairn Colin7ORCID,Seligmann William7ORCID,Shaffer H Bradley56ORCID,Tsutsui Neil D2ORCID

Affiliation:

1. Department of Entomology and Nematology, University of California, Davis , Davis, CA 95616 , United States

2. Department of Environmental Science, Policy, and Management, University of California, Berkeley , Berkeley, CA 94720 , United States

3. Department of Biomolecular Engineering, University of California, Santa Cruz , Santa Cruz, CA 95064 , United States

4. DNA Technologies and Expression Analysis Cores, Genome Center, University of California, Davis , Davis, CA 95616 , United States

5. Department of Ecology and Evolutionary Biology, University of California, Los Angeles , Los Angeles, CA 90095 , United States

6. La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California, Los Angeles , Los Angeles, CA 90095 , United States

7. Department of Ecology and Evolutionary Biology, University of California, Santa Cruz , Santa Cruz, CA 95064 , United States

Abstract

Abstract Carpenter ants in the genus Camponotus are large, conspicuous ants that are abundant and ecologically influential in many terrestrial ecosystems. The bicolored carpenter ant, Camponotus vicinus Mayr, is distributed across a wide range of elevations and latitudes in western North America, where it is a prominent scavenger and predator. Here, we present a high-quality genome assembly of C. vicinus from a sample collected in Sonoma County, California, near the type locality of the species. This genome assembly consists of 38 scaffolds spanning 302.74 Mb, with contig N50 of 15.9 Mb, scaffold N50 of 19.9 Mb, and BUSCO completeness of 99.2%. This genome sequence will be a valuable resource for exploring the evolutionary ecology of C. vicinus and carpenter ants generally. It also provides an important tool for clarifying cryptic diversity within the C. vicinus species complex, a genetically diverse set of populations, some of which are quite localized and of conservation interest.

Funder

United States Department of Agriculture

Publisher

Oxford University Press (OUP)

Subject

Genetics (clinical),Genetics,Molecular Biology,Biotechnology

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