Reference genome for the California ribbed mussel, <i>Mytilus californianus</i>, an ecosystem engineer-Reference-Cited by-同舟云学术

Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer

Published:2022-11-30 Issue:6 Volume:113 Page:681-688
ISSN:0022-1503
Container-title:Journal of Heredity
language:en
Short-container-title:

Author:

Paggeot Lisa X¹^ORCID,DeBiasse Melissa B¹^ORCID,Escalona Merly²^ORCID,Fairbairn Colin³,Marimuthu Mohan P A⁴^ORCID,Nguyen Oanh⁴^ORCID,Sahasrabudhe Ruta⁴^ORCID,Dawson Michael N¹^ORCID

Affiliation:

1. Department of Life & Environmental Sciences, University of California, Merced , Merced, CA 95343 , United States

2. Department of Biomolecular Engineering, University of California Santa Cruz , Santa Cruz, CA 95064 , United States

3. Ecology & Evolutionary Biology Department, University of Santa Cruz , 1156 High St, Santa Cruz, CA 95064 , United States

4. DNA Technologies and Expression Analysis Core Laboratory, Genome Center, Department of Biological Sciences, University of California-Davis , Davis, CA 95616 , United States

Abstract

Abstract The California ribbed mussel, Mytilus californianus, is an ecosystem engineer crucial for the survival of many marine species inhabiting the intertidal zone of California. Here, we describe the first reference genome for M. californianus and compare it to previously published genomes from three other Mytilus species: M. edulis, M. coruscus, and M. galloprovincialis. The M. californianus reference genome is 1.65 Gb in length, with N50 sequence length of 118 Mb, and an estimated 86.0% complete single copy genes. Compared with the other three Mytilus species, the M. californianus genome assembly is the longest, has the highest N50 value, and the highest percentage complete single copy genes. This high-quality genome assembly provides a foundation for population genetic analyses that will give insight into future conservation work along the coast of California.

Funder

Marine Networks Consortium

University of California by the State of California

National Institutes of Health

Publisher

Oxford University Press (OUP)

Subject

Genetics (clinical),Genetics,Molecular Biology,Biotechnology

Link

https://academic.oup.com/jhered/advance-article-pdf/doi/10.1093/jhered/esac041/45318051/esac041.pdf

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