A genome assembly of the Yuma myotis bat, Myotis yumanensis

Author:

Curti Joseph N1ORCID,Fraser Devaughn2ORCID,Escalona Merly3ORCID,Fairbairn Colin W4,Sacco Samuel4ORCID,Sahasrabudhe Ruta5ORCID,Nguyen Oanh5ORCID,Seligmann William4ORCID,Sudmant Peter H6ORCID,Toffelmier Erin1ORCID,Vazquez Juan Manuel6ORCID,Wayne Robert1ORCID,Shaffer H Bradley17ORCID,Buchalski Michael R8ORCID

Affiliation:

1. Department of Ecology and Evolutionary Biology, University of California, Los Angeles (UCLA) , Los Angeles, CA , United States

2. Connecticut Department of Energy and Environmental Protection , Hartford, CT , United States

3. Department of Biomolecular Engineering, University of California, Santa Cruz , Santa Cruz, CA , United States

4. Department of Ecology and Evolutionary Biology, University of California, Santa Cruz , Santa Cruz, CA , United States

5. DNA Technologies and Expression Analysis Core Laboratory, Genome Center, University of California, Davis , Davis, CA , United States

6. Department of Integrative Biology, University of California, Berkeley , Berkeley, CA , United States

7. Institute of the Environment and Sustainability, La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California, Los Angeles (UCLA) , Los Angeles, CA , United States

8. Wildlife Genetics Research Unit, Wildlife Health Laboratory, California Department of Fish and Wildlife , Sacramento, CA , United States

Abstract

Abstract The Yuma myotis bat (Myotis yumanensis) is a small vespertilionid bat and one of 52 species of new world Myotis bats in the subgenus Pizonyx. While M. yumanensis populations currently appear relatively stable, it is one of 12 bat species known or suspected to be susceptible to white-nose syndrome, the fungal disease causing declines in bat populations across North America. Only two of these 12 species have genome resources available, which limits the ability of resource managers to use genomic techniques to track the responses of bat populations to white-nose syndrome generally. Here we present the first de novo genome assembly for Yuma myotis, generated as a part of the California Conservation Genomics Project. The M. yumanensis genome was generated using a combination of PacBio HiFi long reads and Omni-C chromatin-proximity sequencing technology. This high-quality genome is one of the most complete bat assemblies available, with a contig N50 of 28.03 Mb, scaffold N50 of 99.14 Mb, and BUSCO completeness score of 93.7%. The Yuma myotis genome provides a high-quality resource that will aid in comparative genomic and evolutionary studies, as well as inform conservation management related to white-nose syndrome.

Funder

California Conservation Genomics Project

University of California

White-nose Syndrome Recovery Research

U.S. Fish and Wildlife Service

Publisher

Oxford University Press (OUP)

Subject

Genetics (clinical),Genetics,Molecular Biology,Biotechnology

Reference56 articles.

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