A chromosome-level reference genome for the Versatile Fairy Shrimp, <i>Branchinecta lindahli</i>-Reference-Cited by-同舟云学术

A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli

Published:2022-10-12 Issue:1 Volume:114 Page:74-80
ISSN:0022-1503
Container-title:Journal of Heredity
language:en
Short-container-title:

Author:

Kieran Blair Shannon Rose¹^ORCID,Schreier Andrea¹,Escalona Merly²^ORCID,Finger Amanda J¹,Joslin Shannon E K³,Sahasrabudhe Ruta⁴,Marimuthu Mohan P A⁴,Nguyen Oanh⁴,Chumchim Noravit⁴,Morris Emily Reister⁵,Mangelson Hayley⁵,Hull Joshua⁶

Affiliation:

1. Genomic Variation Laboratory, Department of Animal Science, University of California, Davis , Davis, CA , United States

2. Department of Biomolecular Engineering, University of California, Santa Cruz , Santa Cruz, CA , United States

3. U.S. National Park Service, Yosemite National Park , El Portal, CA , United States

4. DNA Technologies and Expression Analysis Cores, UC Davis Genome Center, University of California, Davis , Davis, CA , United States

5. Phase Genomics , Seattle, WA , United States

6. U.S. Fish and Wildlife Service, Sacramento Fish and Wildlife Office , Sacramento, CA , United States

Abstract

Abstract We present the novel reference genome of the Versatile Fairy Shrimp, Branchinecta lindahli. The Versatile Fairy Shrimp is a freshwater anostracan crustacean found across the western United States from Iowa to Oregon and from Alberta to Baja California. It is an ephemeral pool specialist, living in prairie potholes, irrigation ditches, tire treads, vernal pools, and other temporary freshwater wetlands. Anostracan fairy shrimp are facing global declines with 3 species in California on the Endangered Species list. This species was included in the California Conservation Genomics Project to provide an easily accessible reference genome, and to provide whole-genome resources for a generalist species, which may lead to new insights into Anostracan resiliency in the face of climate change. The final gapped genome comprises 15 chromosome-length scaffolds covering 98.63% of the 384.8 Mb sequence length, and an additional 55 unscaffolded contigs.

Funder

Bureau of Reclamation

California Conservation Genomics Project

University of California

NIH

Publisher

Oxford University Press (OUP)

Subject

Genetics (clinical),Genetics,Molecular Biology,Biotechnology

Link

https://academic.oup.com/jhered/advance-article-pdf/doi/10.1093/jhered/esac057/47465265/esac057.pdf

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