Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data-Reference-Cited by-同舟云学术

Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data

Published:2016-06-30 Issue:9 Volume:71 Page:2484-2488
ISSN:0305-7453
Container-title:Journal of Antimicrobial Chemotherapy
language:en
Short-container-title:J. Antimicrob. Chemother.

Author:

Clausen Philip T. L. C.,Zankari Ea,Aarestrup Frank M.,Lund Ole

Funder

European Union's Horizon 2020 research and innovation programme

Center for Genomic Epidemiology

Publisher

Oxford University Press (OUP)

Subject

Infectious Diseases,Pharmacology (medical),Pharmacology,Microbiology (medical)

Link

http://academic.oup.com/jac/article-pdf/71/9/2484/17430278/dkw184.pdf

Reference16 articles.

1. ECDC. Annual Epidemiological Report: Antimicrobial Resistance and Healthcare-Associated Infections 2014. http://ecdc.europa.eu/en/publications/Publications/antimicrobial-resistance-annual-epidemiological-report.pdf .

2. Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing

3. Identification of acquired antimicrobial resistance genes

4. SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

5. Fast gapped-read alignment with Bowtie 2

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