Plant-on-chip: Core morphogenesis processes in the tiny plant Wolffia australiana

Author:

Li Feng1234,Yang Jing-Jing5,Sun Zong-Yi6,Wang Lei7,Qi Le-Yao1,A Sina1,Liu Yi-Qun4,Zhang Hong-Mei4,Dang Lei-Fan4,Wang Shu-Jing2,Luo Chun-Xiong2ORCID,Nian Wei-Feng1,O’Conner Seth7,Ju Long-Zhen6,Quan Wei-Peng6,Li Xiao-Kang6,Wang Chao6,Wang De-Peng6,You Han-Li8,Cheng Zhu-Kuan8ORCID,Yan Jia4,Tang Fu-Chou4ORCID,Yang De-Chang34910,Xia Chu-Wei34910ORCID,Gao Ge34910ORCID,Wang Yan8ORCID,Zhang Bao-Cai8ORCID,Zhou Yi-Hua8ORCID,Guo Xing11,Xiang Sun-Huan11,Liu Huan11,Peng Tian-Bo34,Su Xiao-Dong34ORCID,Chen Yong12ORCID,Ouyang Qi213,Wang Dong-Hui34ORCID,Zhang Da-Ming14,Xu Zhi-Hong34,Hou Hong-Wei5ORCID,Bai Shu-Nong234ORCID,Li Ling7ORCID

Affiliation:

1. The High School Affiliated to Renmin University of China , Beijing 100080 , China

2. Center of Quantitative Biology, Peking University , Beijing 100871 , China

3. State Key Laboratory of Protein & Plant Gene Research, Peking University , Beijing 100871 , China

4. College of Life Sciences, Peking University , Beijing 100871 , China

5. Institute of Hydrobiology, Chinese Academy of Sciences , Wuhan 430072 , China

6. GrandOmics Biosciences Ltd. , Wuhan 430076 , China

7. Department of Biological Sciences, Mississippi State University , Mississippi State, MS 39762 , USA

8. Key Laboratory of Plant Functional Genomics of the Ministry of Education, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University , Yangzhou 225009 , China

9. Biomedical Pioneering Innovative Center (BIOPIC) and Beijing Advanced Innovation Center for Genomics (ICG) , Beijing 100871 , China

10. Center for Bioinformatics (CBI) , Peking University, Beijing 100871 , China

11. State Key Laboratory of Agricultural Genomics, BGI-Shenzhen , Shenzhen 518083 , China

12. PASTEUR, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS , 24 rue Lhomond, Paris 75005 , France

13. School of Physics, Peking University , Beijing 100871 , China

14. Institute of Botany, Chinese Academy of Sciences , Beijing 100093 , China

Abstract

Abstract A plant can be thought of as a colony comprising numerous growth buds, each developing to its own rhythm. Such lack of synchrony impedes efforts to describe core principles of plant morphogenesis, dissect the underlying mechanisms, and identify regulators. Here, we use the minimalist known angiosperm to overcome this challenge and provide a model system for plant morphogenesis. We present a detailed morphological description of the monocot Wolffia australiana, as well as high-quality genome information. Further, we developed the plant-on-chip culture system and demonstrate the application of advanced technologies such as single-nucleus RNA-sequencing, protein structure prediction, and gene editing. We provide proof-of-concept examples that illustrate how W. australiana can decipher the core regulatory mechanisms of plant morphogenesis.

Funder

U.S. National Science Foundation

Mississippi State University

International Partnership Program of Chinese Academy of Sciences

National Natural Science Foundation of China

Publisher

Oxford University Press (OUP)

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