Distinct senescence mechanisms restrain progression of dysplastic nevi

Author:

Lorbeer Franziska K1ORCID,Rieser Gabrielle1ORCID,Goel Aditya1,Wang Meng2,Oh Areum3,Yeh Iwei245ORCID,Bastian Boris C245ORCID,Hockemeyer Dirk167ORCID

Affiliation:

1. Department of Molecular and Cell Biology, University of California, Berkeley , Berkeley, CA 94720 , USA

2. Department of Dermatology, University of California, San Francisco , San Francisco, CA 94143, USA

3. Rebus Biosystems , Santa Clara, CA 95050, USA

4. Department of Pathology, University of California, San Francisco , San Francisco, CA 94143, USA

5. Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco , San Francisco, CA 94143, USA

6. Chan Zuckerberg Biohub , San Francisco, CA 94158, USA

7. Innovative Genomics Institute, University of California , Berkeley, CA 94720, USA

Abstract

Abstract Telomerase reverse transcriptase (TERT) promoter mutations (TPMs) are frequently found in different cancer types, including ∼70% of sun-exposed skin melanomas. In melanoma, TPMs are among the earliest mutations and can be present during the transition from nevus to melanoma. However, the specific factors that contribute to the selection of TPMs in certain nevi subsets are not well understood. To investigate this, we analyzed a group of dysplastic nevi (DN) by sequencing genes commonly mutated in melanocytic neoplasms. We examined the relationship between the identified mutations, patient age, telomere length, histological features, and the expression of p16. Our findings reveal that TPMs are more prevalent in DN from older patients and are associated with shorter telomeres. Importantly, these TPMs were not found in nevi with BRAF V600E mutations. Conversely, DN with BRAF V600E mutations were observed in younger patients, had longer telomeres and a higher proportion of p16-positive cells. This suggests that these nevi arrest growth independently of telomere shortening through a mechanism known as oncogene-induced senescence (OIS). These characteristics extend to melanoma-sequencing datasets, where melanomas with BRAF V600E mutations were more likely to have a CDKN2A inactivation, overriding OIS. In contrast, melanomas without BRAF V600E mutations showed a higher frequency of TPMs. Our data imply that TPMs are selected to bypass replicative senescence (RS) in cells that were not arrested by OIS. Overall, our results indicate that a subset of melanocytic neoplasms face constraints from RS, while others encounter OIS and RS. The order in which these barriers are overcome during progression to melanoma depends on the mutational context.

Funder

NCI

American Cancer Society

Siebel Stem Cell Institute

Chen Zuckerberg Biohub

Pew Charitable Trusts

Alexander and Margaret Stewart Trust

Boehringer Ingelheim Fonds

Publisher

Oxford University Press (OUP)

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