From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data-Reference-Cited by-同舟云学术

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From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data

Published:2017-01-18 Issue:2 Volume:6 Page:
ISSN:2047-217X
Container-title:GigaScience
language:en
Short-container-title:

Author:

Mysara Mohamed¹²³⁴,Njima Mercy¹,Leys Natalie¹,Raes Jeroen²³⁴,Monsieurs Pieter¹

Affiliation:

1. Unit of Microbiology, Belgian Nuclear Research Centre (SCK-CEN), Boeretang 200, 2400 Mol, Belgium

2. Department of Bio-Engineering Sciences, Vrije Universiteit Brussel (VUB), Pleinlaan 2, 1050 Brussel, Belgium

3. VIB Center for the Biology of Disease, VIB, Herestraat 49 - box 1028, 3000 Leuven, Belgium

4. Department of Microbiology and Immunology, REGA institute, Herestraat 49 - box 1028, 3000 Leuven, Belgium

Publisher

Oxford University Press (OUP)

Subject

Computer Science Applications,Health Informatics

Link

http://academic.oup.com/gigascience/article-pdf/6/2/giw017/25513671/giw017.pdf

Reference66 articles.

1. Using pyrosequencing to shed light on deep mine microbial ecology;Edwards;BMC Genomics,2006

2. Microbial diversity in the deep sea and the underexplored “rare biosphere”;Sogin;Proc Natl Acad Sci U S A,2006

3. Bacterial community shift in treated periodontitis patients revealed by ion torrent 16S rRNA gene amplicon sequencing;Jünemann;PLoS One,2012

4. Microbiome profiling by illumina sequencing of combinatorial sequence-taggefd PCR products;Gloor;PLoS One,2010

5. Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform;Fichot;Microbiome,2013

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