The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species

Author:

Wu Linhuan123,McCluskey Kevin45,Desmeth Philippe46,Liu Shuangjiang24,Hideaki Sugawara7,Yin Ye8,Moriya Ohkuma9,Itoh Takashi9,Kim Cha Young10,Lee Jung-Sook10,Zhou Yuguang11,Kawasaki Hiroko12,Hazbón Manzour Hernando13,Robert Vincent14,Boekhout Teun141516,Lima Nelson17,Evtushenko Lyudmila18,Boundy-Mills Kyria419,Bunk Boyke20,Moore Edward R B21,Eurwilaichitr Lily422,Ingsriswang Supawadee22,Shah Heena23,Yao Su24,Jin Tao8,Huang Jinqun8,Shi Wenyu1,Sun Qinglan1,Fan Guomei1,Li Wei1,Li Xian1,Kurtböke İpek425ORCID,Ma Juncai1234ORCID

Affiliation:

1. Microbial Resource and Big Data Center, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China

2. State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China

3. WFCC-MIRCEN World Data Center for Microorganisms, Beijing 100101, China

4. World Federation of Culture Collections (WFCC)

5. Fungal Genetics Stock Center, Kansas State University, Manhattan, KS 66506, USA

6. Belgian Coordinated Collections of Micro-organisms Program, Belgian Science Policy Office, Brussels 231 1050, Belgium

7. National Institute of Genetics, Yata, Mishima 411-8540, Japan

8. BGI Genomics, BGI-Shenzhen, Shenzhen 518083, China

9. Japan Collection of Microorganisms/Microbe Division, RIKEN BioResource Center, Koyadai 3-1-1, Tsukuba, Ibaraki 305-0074, Japan

10. Korean Collection for Type Cultures, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 181 Ipsin-gil, Jeongeup-si, Jeollabuk-do, 56212, Republic of Korea

11. China General Microbiological Culture Collection Center, Institute of Microbiology, Chinese Academy of Sciences, Beijing10010, China

12. NITE Biological Resource Center, National Institute of Technology and Evaluation, 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan

13. American Type Culture Collection, 10801 University Boulevard, Manassas, VA 20110, USA

14. Westerdijk Fungal Biodiversity Institue, Utrecht 3534CT, Netherlands

15. Institute of Biodiversity and Ecosystem Dynamics, University of Amsterdam, Spui 21 1012 WX Amsterdam, Netherlands

16. Shanghai Key Laboratory of Molecular Medical Mycology, Shanghai Institute of Mycology, Shanghai Changzheng Hospital, Shanghai 200003, China

17. Micoteca da Universidade do Minho, Biological Engineering Centre, 4710-057 Braga, Portugal

18. All-Russian Collection of Microorganisms, GK Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS, Pushchino, Moscow Region 142290, Russia

19. Phaff Yeast Culture Collection, Food Science and Technology Department, University of California Davis, 1 Shields Avenue, Davis, CA 95616–8598, USA

20. Leibniz-Institute DSMZ – German Collection of Microorganisms and Cell Cultures, D-38124 Braunschweig, Germany

21. Culture Collection University of Gothenburg (CCUG), Sahlgrenska Academy of the University of Gothenburg, SE-41346 Gothenburg, Sweden

22. Bioresources Technology Unit, Thailand Bioresource Research Center, National Center for Genetic Engineering and Biotechnology, Bangkok National Science and Technology Development Agency, 113, Thailand

23. National Collection of Type Cultures, Public Health England, Porton Down, Salisbury, Wiltshire SP4 0JG, UK

24. China Center of Industrial Culture Collection, Beijing 100015, China

25. Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Maroochydore, Queensland 4558, Australia

Funder

Chinese Academy of Sciences

Bureau of International Cooperation of the Chinese Academy of Sciences

National Key Research Program of China

13th Five-year Informatization Plan of the Chinese Academy of Sciences

National Science Foundation for Young Scientists of China

Publisher

Oxford University Press (OUP)

Subject

Computer Science Applications,Health Informatics

Reference10 articles.

1. Estimating prokaryotic diversity and its limits;Curtis;Proc Natl Acad Sci,2002

2. A new genomics-driven taxonomy of bacteria and archaea: are we there yet?;Garrity;J Clin Microbiol,2016

3. The magnitude of fungal diversity: the 1.5 million species estimate revisited;Hawksworth;Mycol Res,2001

4. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes;Chun;Int J Syst Evol Microbiol,2018

5. Deciphering the human microbiome using next-generation sequencing data and bioinformatics approaches;Kim;Methods,2015

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