Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning
Author:
Affiliation:
1. Institute for Molecular Bioscience, University of Queensland, St Lucia, Brisbane, QLD 4072, Australia
2. Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955, Saudi Arabia
Funder
NHMRC
ARC
Publisher
Oxford University Press (OUP)
Subject
Computer Science Applications,Health Informatics
Link
http://academic.oup.com/gigascience/article-pdf/7/5/giy037/28599334/giy037.pdf
Reference37 articles.
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2. The potential and challenges of nanopore sequencing;Branton;Nature Biotechnology,2008
3. Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore;Stoddart;Proc Nat Acad of Sci U S A,2009
4. MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island;Ashton;Nature Biotechnology,2014
5. Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinIONTM sequencing;Cao;GigaScience,2016
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