GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome-Reference-Cited by-同舟云学术

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

Published:2017-04-27 Issue:7 Volume:6 Page:
ISSN:2047-217X
Container-title:GigaScience
language:en
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Author:

Simovski Boris¹,Vodák Daniel²,Gundersen Sveinung¹,Domanska Diana¹,Azab Abdulrahman¹³,Holden Lars⁴,Holden Marit⁴,Grytten Ivar¹,Rand Knut⁵,Drabløs Finn⁶,Johansen Morten⁷,Mora Antonio¹⁸,Lund-Andersen Christin²,Fromm Bastian²,Eskeland Ragnhild⁸⁹,Gabrielsen Odd Stokke⁸,Ferkingstad Egil¹⁰,Nakken Sigve²,Bengtsen Mads⁸,Nederbragt Alexander Johan¹¹¹,Thorarensen Hildur Sif¹,Akse Johannes Andreas¹,Glad Ingrid⁵,Hovig Eivind¹²⁴⁷,Sandve Geir Kjetil¹

Affiliation:

1. Department of Informatics, University of Oslo, Oslo, Norway

2. Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway

3. Research Support Services Group, University Center for Information Technology, Oslo, Norway

4. Statistics For Innovation, Norwegian Computing Center, Oslo, Norway

5. Department of Mathematics, University of Oslo, Oslo, Norway

6. Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway

7. Institute for Medical Informatics, The Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway

8. Department of Biosciences, University of Oslo, Oslo, Norway

9. Norwegian Center for Stem Cell Research, Department of Immunology, Oslo University Hospital, Oslo, Norway

10. Science Institute, University of Iceland, Reykjavik, Iceland

11. Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway

Publisher

Oxford University Press (OUP)

Subject

Computer Science Applications,Health Informatics

Link

http://academic.oup.com/gigascience/article-pdf/6/7/gix032/25515014/gix032.pdf

Reference38 articles.

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3. Orchestrating high-throughput genomic analysis with Bioconductor;Huber;Nature Publishing Group,2015

4. Galaxy Team. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences;Goecks;Genome Biol,2010

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1. Web-based multi-omics integration using the Analyst software suite;Nature Protocols;2024-02-14

2. hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks;PLOS ONE;2023-07-19

3. EpiMix is an integrative tool for epigenomic subtyping using DNA methylation;Cell Reports Methods;2023-07

4. Genome-wide mapping of G-quadruplex structures with CUT&Tag;Nucleic Acids Research;2021-11-18

5. Chromatin occupancy and target genes of the haematopoietic master transcription factor MYB;Scientific Reports;2021-04-26