An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population

Author:

Nind Thomas1ORCID,Sutherland James1ORCID,McAllister Gordon1ORCID,Hardy Douglas1,Hume Ally2ORCID,MacLeod Ruairidh2ORCID,Caldwell Jacqueline3ORCID,Krueger Susan1ORCID,Tramma Leandro1ORCID,Teviotdale Ross1,Abdelatif Mohammed1ORCID,Gillen Kenny1ORCID,Ward Joe1ORCID,Scobbie Donald2,Baillie Ian3,Brooks Andrew2ORCID,Prodan Bianca2,Kerr William2,Sloan-Murphy Dominic2,Herrera Juan F R2ORCID,McManus Dan2,Morris Carole3ORCID,Sinclair Carol4,Baxter Rob2ORCID,Parsons Mark2ORCID,Morris Andrew5ORCID,Jefferson Emily1ORCID

Affiliation:

1. Health Informatics Centre (HIC), School of Medicine, University of Dundee, (Main level 5 corridor), Second Floor, Level 7, Mailbox 15, Ninewells Hospital & Medical School, Dundee DD1 9SY2, UK

2. Edinburgh Parallel Computing Centre (EPCC), Edinburgh University, Bayes Centre, 47 Potterrow, Edinburgh EH8 9BT, UK

3. Electronic Data Research and Innovation Service (eDRIS), Public Health Scotland (PHS), Nine, Edinburgh Bioquarter, Little France Road, Edinburgh EH16 4UX, UK

4. Data Driven Innovation, Public Health Scotland (PHS), Gyle Square, 1 South Gyle Crescent, Edinburgh EH12 9EB,  UK

5. Health Data Research (HDR) UK, Gibbs Building, 215 Euston Road, London NW1 2BE, UK

Abstract

Abstract Aim To enable a world-leading research dataset of routinely collected clinical images linked to other routinely collected data from the whole Scottish national population. This includes more than 30 million different radiological examinations from a population of 5.4 million and >2 PB of data collected since 2010. Methods Scotland has a central archive of radiological data used to directly provide clinical care to patients. We have developed an architecture and platform to securely extract a copy of those data, link it to other clinical or social datasets, remove personal data to protect privacy, and make the resulting data available to researchers in a controlled Safe Haven environment. Results An extensive software platform has been developed to host, extract, and link data from cohorts to answer research questions. The platform has been tested on 5 different test cases and is currently being further enhanced to support 3 exemplar research projects. Conclusions The data available are from a range of radiological modalities and scanner types and were collected under different environmental conditions. These real-world, heterogenous data are valuable for training algorithms to support clinical decision making, especially for deep learning where large data volumes are required. The resource is now available for international research access. The platform and data can support new health research using artificial intelligence and machine learning technologies, as well as enabling discovery science.

Funder

Farr Institute of Health Informatics Research and Dundee University Medical School

Medical Research Council Canada

Wellcome Trust

Publisher

Oxford University Press (OUP)

Subject

Computer Science Applications,Health Informatics

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