Artificial intelligence deciphers codes for color and odor perceptions based on large-scale chemoinformatic data

Author:

Zhang Xiayin1ORCID,Zhang Kai12,Lin Duoru1,Zhu Yi13,Chen Chuan14,He Lin2,Guo Xusen5,Chen Kexin1,Wang Ruixin1,Liu Zhenzhen1,Wu Xiaohang1,Long Erping1ORCID,Huang Kai5,He Zhiqiang6,Liu Xiyang2,Lin Haotian17ORCID

Affiliation:

1. State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Xian Lie South Road 54#, Guangzhou 510060, China

2. School of Computer Science and Technology, Xidian University, Tai Bai South Road 2#, Xi'an 710000, China

3. Department of Molecular and Cellular Pharmacology, University of Miami Miller School of Medicine, 1120 NW 14th Street, Miami, FL 33136, USA

4. Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, 1120 NW 14th Street, Miami, FL 33136, USA

5. Key Laboratory of Machine Intelligence and Advanced Computing, Ministry of Education School of Data and Computer Science, Sun Yat-Sen University, Wai Huan East Road 132#, Guangzhou 510000, China

6. Key Laboratory of Universal Wireless Communications, Beijing University of Posts and Telecommunications, West Tu Cheng Road 10#, Beijing 100876, China

7. Center of Precision Medicine, Sun Yat-sen University, Xin Guang West Road 135#, Guangzhou 510080, China

Abstract

Abstract Background Color vision is the ability to detect, distinguish, and analyze the wavelength distributions of light independent of the total intensity. It mediates the interaction between an organism and its environment from multiple important aspects. However, the physicochemical basis of color coding has not been explored completely, and how color perception is integrated with other sensory input, typically odor, is unclear. Results Here, we developed an artificial intelligence platform to train algorithms for distinguishing color and odor based on the large-scale physicochemical features of 1,267 and 598 structurally diverse molecules, respectively. The predictive accuracies achieved using the random forest and deep belief network for the prediction of color were 100% and 95.23% ± 0.40% (mean ± SD), respectively. The predictive accuracies achieved using the random forest and deep belief network for the prediction of odor were 93.40% ± 0.31% and 94.75% ± 0.44% (mean ± SD), respectively. Twenty-four physicochemical features were sufficient for the accurate prediction of color, while 39 physicochemical features were sufficient for the accurate prediction of odor. A positive correlation between the color-coding and odor-coding properties of the molecules was predicted. A group of descriptors was found to interlink prominently in color and odor perceptions. Conclusions Our random forest model and deep belief network accurately predicted the colors and odors of structurally diverse molecules. These findings extend our understanding of the molecular and structural basis of color vision and reveal the interrelationship between color and odor perceptions in nature.

Funder

National Key Research and Development Program of China

Key Research and Development Program of Guangdong Province

National Natural Science Foundation of China

Publisher

Oxford University Press (OUP)

Subject

Computer Science Applications,Health Informatics

Reference43 articles.

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2. The representation of colored objects in macaque color patches;Chang;Nat Commun,2017

3. Physics of structural colors;Kinoshita;Rep Prog Phys,2008

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