Construction of the third-generation Zea mays haplotype map

Author:

Bukowski Robert1,Guo Xiaosen23,Lu Yanli4,Zou Cheng5,He Bing2,Rong Zhengqin2,Wang Bo2,Xu Dawen2,Yang Bicheng2,Xie Chuanxiao5,Fan Longjiang6,Gao Shibin4,Xu Xun2,Zhang Gengyun2,Li Yingrui2,Jiao Yinping7,Doebley John F8,Ross-Ibarra Jeffrey9,Lorant Anne9,Buffalo Vince9,Romay M Cinta10,Buckler Edward S1011,Ware Doreen7,Lai Jinsheng12,Sun Qi1,Xu Yunbi513ORCID

Affiliation:

1. Bioinformatics Facility, Institute of Biotechnology, Cornell University, Ithaca, NY, 14853, USA

2. BGI-Shenzhen, Shenzhen 518083, China

3. Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 Copenhagen, Denmark

4. Maize Research Institute, Sichuan Agricultural University, Wenjiang 611130, Sichuan, China

5. Institute of Crop Science, Chinese Academy of Agricultural Sciences/National Key Facilities for Crop Gene Resource and Genetic Improvement, Beijing 100081, China

6. Institute of Crop Science and Institute of Bioinformatics, Department of Agronomy, Zhejiang University, Hangzhou 310058, China

7. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA

8. Department of Genetics, University of Wisconsin, Madison, WI 53706, USA

9. Department of Plant Sciences, University of California, Davis, CA 95616, USA

10. Institute for Genomic Diversity, Cornell University, Ithaca, NY 14853, USA

11. US Department of Agriculture-Agricultural Research Service, Ithaca, NY 14853, USA

12. National Maize Improvement Center, China Agricultural University, Beijing 100193, China

13. International Maize and Wheat Improvement Center (CIMMYT), El Batan 56130, Texcoco, Mexico

Funder

National Key Basic Research Program of China

National Science Foundation of China

USDA National Institute of Food and Agriculture

Publisher

Oxford University Press (OUP)

Subject

Computer Science Applications,Health Informatics

Reference19 articles.

1. Maize HapMap2 identifies extant variation from a genome in flux;Chia;Nat Genet,2012

2. A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array;Unterseer;BMC Genomics,2014

3. Supporting data for “Construction of the third generation Zea mays haplotype map.”;Bukowski;GigaScience Database,2017

4. An integrated map of genetic variation from 1,092 human genomes;Abecasis;Nature,2012

5. A framework for variation discovery and genotyping using next-generation DNA sequencing data;DePristo;Nat Genet,2011

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