De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers-Reference-Cited by-同舟云学术

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De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers

Published:2019-05-01 Issue:5 Volume:8 Page:
ISSN:2047-217X
Container-title:GigaScience
language:en
Short-container-title:

Author:

Hölzer Martin¹²^ORCID,Marz Manja¹²³^ORCID

Affiliation:

1. RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University, Leutragraben 1, 07743 Jena, Germany

2. European Virus Bioinformatics Center, Friedrich Schiller University, Leutragraben 1, 07743 Jena, Germany

3. FLI Leibniz Institute for Age Research, Beutenbergstraße 11, 07743 Jena, Germany

Funder

German Research Foundation

Publisher

Oxford University Press (OUP)

Subject

Computer Science Applications,Health Informatics

Link

http://academic.oup.com/gigascience/article-pdf/8/5/giz039/28600023/giz039.pdf

Reference60 articles.

1. RNA-Seq: a revolutionary tool for transcriptomics;Wang;Nat Rev Genet,2009

2. Next-generation transcriptome assembly;Martin;Nat Rev Genet,2011

3. RNA-Seq using next generation sequencing;Corney;Mater Methods,2013

4. A survey of best practices for RNA-seq data analysis;Conesa;Genome Biol,2016

5. RNA-Seq methods for transcriptome analysis;Hrdlickova;Wiley Interdiscip Rev RNA,2017

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