Detection of volatile organic compounds as new paradigm to accelerate antimicrobial susceptibility testing: performance evaluation of VITEK® REVEAL™

Author:

Bianco Gabriele12ORCID,Boattini Matteo234ORCID,Comini Sara5,Bondi Alessandro23,Curtoni Antonio23ORCID,Piccinini Giorgia36,Musso Tiziana3,Broccolo Francesco1,Cavallo Rossana23,Nordmann Patrice78910,Costa Cristina23

Affiliation:

1. Department of Experimental Medicine, University of Salento , Lecce , Italy

2. Microbiology and Virology Unit, University Hospital Città della Salute e della Scienza di Torino , Turin , Italy

3. Department of Public Health and Paediatrics, University of Turin , Turin , Italy

4. Lisbon Academic Medical Centre , Lisbon , Portugal

5. Operative Unit of Clinical Pathology, Carlo Urbani Hospital , Ancona , Italy

6. PhD National Programme in One Health Approaches to Infectious Diseases and Life Science Research, Department of Public Health, Experimental and Forensic Medicine, University of Pavia , Pavia 27100 , Italy

7. Medical and Molecular Microbiology, Faculty of Science and Medicine, University of Fribourg , 1700 Fribourg , Switzerland

8. Swiss National Reference Center for Emerging Antibiotic Resistance (NARA), University of Fribourg , 1700 Fribourg , Switzerland

9. INSERM European Unit (IAME), University of Fribourg , 1700 Fribourg , Switzerland

10. Institute for Microbiology, University of Lausanne and University Hospital Centre , 1011 Lausanne , Switzerland

Abstract

Abstract Objectives The measurement of VOCs release in the headspace of a bacterial culture represents a new approach to rapidly assess antimicrobial susceptibility. Herein, we evaluated the diagnostic performance of the VITEK® REVEAL™ system directly from a collection of Gram-negative positive blood cultures. Materials and methods One hundred and twenty-eight positive blood cultures were included in the analysis (Enterobacterales, n = 95; Pseudomonas aeruginosa, n = 21; Acinetobacter baumannii complex, n = 12). Samples were processed using VITEK® REVEAL™ according to the manufacturer’s recommendations, and MICs of 22 antimicrobials were compared with those obtained using reference methods. Categorical agreement (CA), essential agreement (EA) and categorical errors were calculated. Results Overall, 2220 strain/antibiotic pair combinations were analysed. Of these, most were classified as resistant by reference antimicrobial susceptibility testing (1091/2220; 48.7%). The overall CA and EA were 97.6% and 97.7%, respectively. CA ranged from 97.5% in Enterobacterales to 97.9% in both P. aeruginosa and A. baumannii complex. The overall number of categorical discrepancies were: 18 very major errors (1.6%), 13 major errors (1.2%) and 22 minor errors (2.4%). EA ranged from 95.2% in P. aeruginosa to 98.1% in Enterobacterales. Screening test for ESBL phenotype was positive, indeterminate and negative in 13.7%, 32.6% and 27.4% of Enterobacterales isolates tested by both VITEK® REVEAL™ and the reference method, showing 100% CA. Conclusions VITEK® REVEAL™ represents a reliable tool to obtain antimicrobial susceptibility results of the main Gram-negative species directly from positive blood cultures with time to results of less than 8 h.

Funder

EU

Publisher

Oxford University Press (OUP)

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