DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts
Author:
Affiliation:
1. The Sainsbury Laboratory, University of Cambridge, Cambridge CB2 1LR, UK
2. DAMTP, University of Cambridge, Cambridge CB3 0WA, UK
3. School of Biological Sciences, University of Essex, Colchester CO4 3SQ, UK
Funder
European Research Council
Gatsby Foundation
Publisher
Oxford University Press (OUP)
Subject
Genetics
Link
http://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gky602/25136747/gky602.pdf
Reference38 articles.
1. DNA methylation patterns and epigenetic memory;Bird;Genes Dev.,2002
2. Functions of DNA methylation: islands, start sites, gene bodies and beyond;Jones;Nat. Rev. Genet.,2012
3. MOABS: model based analysis of bisulfite sequencing data;Sun;Genome Biol.,2014
4. R Development Core Team,2014
5. Bioconductor: open software development for computational biology and bioinformatics;Gentleman;Genome Biol.,2004
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