Ring-shaped replicative helicase encircles double-stranded DNA during unwinding

Author:

Joo Sihwa12,Chung Bong H123,Lee Mina4,Ha Tai H12ORCID

Affiliation:

1. BioNanoTechnology Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Republic of Korea

2. Department of Nanobiotechnology, University of Science and Technology (UST), Daejeon 34113, Republic of Korea

3. BioNano Health Guard Research Center, Daejeon 34141, Republic of Korea

4. Center for Nano-Bio Measurement, Korea Research Institute of Standards and Science, Daejeon 34113, Republic of Korea

Abstract

AbstractRing-shaped replicative helicases are hexameric and play a key role in cellular DNA replication. Despite their importance, our understanding of the unwinding mechanism of replicative helicases is far from perfect. Bovine papillomavirus E1 is one of the best-known model systems for replicative helicases. E1 is a multifunctional initiator that senses and melts the viral origin and unwinds DNA. Here, we study the unwinding mechanism of E1 at the single-molecule level using magnetic tweezers. The result reveals that E1 as a single hexamer is a poorly processive helicase with a low unwinding rate. Tension on the DNA strands impedes unwinding, indicating that the helicase interacts strongly with both DNA strands at the junction. While investigating the interaction at a high force (26–30 pN), we discovered that E1 encircles dsDNA. By comparing with the E1 construct without a DNA binding domain, we propose two possible encircling modes of E1 during active unwinding.

Funder

Development of Platform Technology for Innovative Medical Measurements Program

Research Initiative Program

R&D Convergence Program

Publisher

Oxford University Press (OUP)

Subject

Genetics

Reference65 articles.

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1. Structural insight into the assembly and working mechanism of helicase-primase D5 from Mpox virus;Nature Structural & Molecular Biology;2024-01

2. The Facts and Family Secrets of Plasmids That Replicate via the Rolling-Circle Mechanism;Microbiology and Molecular Biology Reviews;2021-12-08

3. DNA replication machinery: Insights from in vitro single-molecule approaches;Computational and Structural Biotechnology Journal;2021

4. DNA replication: In vitro single-molecule manipulation data analysis and models;Computational and Structural Biotechnology Journal;2021

5. Replication | DNA Helicases: Hexameric Enzyme Action;Encyclopedia of Biological Chemistry III;2021

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