Insight into the mechanism of geranyl-β-phellandrene formation catalyzed by Class IB terpene synthases

Author:

Iwakata Shogo1,Asada Kazuya1,Nishi Tomoyuki1,Stepanova Rafaella1,Shinoda So1,Ueda Daijiro1ORCID,Fujihashi Masahiro2ORCID,Yasuno Yoko3ORCID,Shinada Tetsuro3ORCID,Sato Tsutomu1ORCID

Affiliation:

1. Graduate School of Science and Technology, Niigata University, Nishi-ku, Niigata, Japan

2. Department of Chemistry, Faculty of Medicine, Osaka Medical and Pharmaceutical University, Takatsuki, Osaka, Japan

3. Graduate School of Science, Osaka City University, Sumiyoshi, Osaka, Japan

Abstract

ABSTRACT Terpene synthase (TS) from Bacillus alcalophilus (BalTS) is the only Class IB TS for which a 3D structure has been elucidated. Recently, geranyl-β-phellandrene, a novel cyclic diterpene, was identified as a product of BalTS in addition to the acyclic β-springene. In the present study, we have provided insight into the mechanism of geranyl-β-phellandrene formation. Deuterium labeling experiments revealed that the compound is produced via a 1,3-hydride shift. In addition, nonenzymatic reactions using divalent metal ions were performed. The enzyme is essential for the geranyl-β-phellandrene formation. Furthermore, BalTS variants targeting tyrosine residues enhanced the yield of geranyl-β-phellandrene and the proportion of the compound of the total products. It was suggested that the expansion of the active site space may allow the conformation of the intermediates necessary for cyclization. The present study describes the first Class IB TSs to successfully alter product profiles while retaining high enzyme activity.

Funder

Japan Society for the Promotion of Science

Publisher

Informa UK Limited

Subject

Organic Chemistry,Molecular Biology,Applied Microbiology and Biotechnology,General Medicine,Biochemistry,Analytical Chemistry,Biotechnology

Reference10 articles.

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4. Hydride shifts in the biosynthesis of the p-menthane monoterpenes α-terpinene, γ-terpinene, and β-phellandrene;LaFever;Arch Biochem Biophys,1993

5. Selective oxidation of alcohol-d1 to aldehyde-d1 using MnO2;Okamura;RSC Adv,2021

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