Coloc-stats: a unified web interface to perform colocalization analysis of genomic features

Author:

Simovski Boris1,Kanduri Chakravarthi12,Gundersen Sveinung13,Titov Dmytro13,Domanska Diana1,Bock Christoph456,Bossini-Castillo Lara7,Chikina Maria8,Favorov Alexander910,Layer Ryan M1112,Mironov Andrey A131415,Quinlan Aaron R111216,Sheffield Nathan C17,Trynka Gosia7,Sandve Geir K12ORCID

Affiliation:

1. Department of Informatics, University of Oslo, Gaustadalléen 23 B, N-0373 Oslo, Norway

2. K. G. Jebsen Centre for Coeliac Disease Research, Oslo University Hospital, Sognsvannsveien 20, 0372 Oslo, Norway

3. Elixir Norway - Oslo node, Department of Informatics, University of Oslo, Gaustadalléen 23 B, N-0373 Oslo, Norway

4. CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria

5. Department of Laboratory Medicine, Medical University of Vienna, 1090 Vienna, Austria

6. Max Planck Institute for Informatics, 66123 Saarbrücken, Germany

7. Cellular Genetics Programme, Wellcome Sanger Institute, CB10 1SA Hinxton, UK

8. University of Pittsburgh School of Medicine, 3550 Terrace Street, Pittsburgh, PA 15213, USA

9. Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, The Johns Hopkins University School of Medicine, 550 N Broadway, Baltimore, MD 21205, USA

10. Laboratory of Systems Biology and Computational Genetics, Vavilov Institute of General Genetics, Gubkina Street 3, Moscow 119333, Russia

11. Department of Human Genetics, University of Utah, 15 N 2030 E, Salt Lake City, UT 84112, USA

12. USTAR Center for Genetic Discovery, University of Utah, 15 N 2030 E, Salt Lake City, UT 84112, USA

13. Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Lab. Bldg B, Vorobiovy Gory 1-73, Moscow 119992, Russia

14. Skolkovo Institute of Science and Technology, Nobelya ul. 3, Moscow 121205, Russia

15. Institute for Information Transmission Problems, Russian Academy of Sciences, Bolshoi Karenty per. 19, Moscow 127994, Russia

16. Department of Biomedical Informatics, University of Utah, 421 Wakara Way, Salt Lake City, UT 84108, USA

17. Center for Public Health Genomics, University of Virginia, Charlottesville, VA 22903 USA

Funder

Horizon 2020 research and innovation programme

National Institutes of Health

Russian Foundation for Basic Research

Wellcome Trust

MRC Skills Development

National Human Genome Research Institute

National Cancer Institute

Publisher

Oxford University Press (OUP)

Subject

Genetics

Reference20 articles.

1. Coming of age: ten years of next-generation sequencing technologies;Goodwin;Nat. Rev. Genet.,2016

2. Initial impact of the sequencing of the human genome;Lander;Nature,2011

3. Determining significance of pairwise co-occurrences of events in bursty sequences;Haiminen;BMC Bioinformatics,2008

4. The genomic hyperbrowser: inferential genomics at the sequence level;Sandve;Genome Biol.,2010

5. Exploring massive, genome scale datasets with the genometricorr package;Favorov;PLoS Comput. Biol.,2012

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