Turning Vice into Virtue: Using Batch-Effects to Detect Errors in Large Genomic Data Sets-Reference-Cited by-同舟云学术

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Turning Vice into Virtue: Using Batch-Effects to Detect Errors in Large Genomic Data Sets

Published:2018-09-10 Issue:10 Volume:10 Page:2697-2708
ISSN:1759-6653
Container-title:Genome Biology and Evolution
language:en
Short-container-title:

Author:

Mafessoni Fabrizio¹,Prasad Rashmi B²,Groop Leif²³,Hansson Ola²,Prüfer Kay¹

Affiliation:

1. Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany

2. Department of Clinical Sciences, Diabetes and Endocrinology, Lund University Diabetes Center, Malmö, Sweden

3. Finnish Institute for Molecular Medicine (FIMM), Helsinki University, Finland

Funder

Max Planck Society

Publisher

Oxford University Press (OUP)

Subject

Genetics,Ecology, Evolution, Behavior and Systematics

Link

http://academic.oup.com/gbe/article-pdf/10/10/2697/26035116/evy199.pdf

Reference33 articles.

1. Fast model-based estimation of ancestry in unrelated individuals;Alexander;Genome Res,2009

2. DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification;Chen;Science,2017

3. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing;Dohm;Nucleic Acids Res.,2008

4. Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays;Drmanac;Science,2010

5. The genetic architecture of type 2 diabetes;Fuchsberger;Nature,2016

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1. Analysis of the Batch Effect Due to Sequencing Center in Population Statistics Quantifying Rare Events in the 1000 Genomes Project;Genes;2021-12-24

2. Negative linkage disequilibrium between amino acid changing variants reveals interference among deleterious mutations in the human genome;PLOS Genetics;2021-07-28

3. Features of Functional Human Genes;2020-10-10

4. Negative linkage disequilibrium between amino acid changing variants reveals interference among deleterious mutations in the human genome;2020-01-15

5. Legacy Data Confound Genomics Studies;Molecular Biology and Evolution;2019-08-30

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