A new strategy to reduce allelic bias in RNA-Seq readmapping-Reference-Cited by-同舟云学术

A new strategy to reduce allelic bias in RNA-Seq readmapping

Published:2012-05-14 Issue:16 Volume:40 Page:e127-e127
ISSN:1362-4962
Container-title:Nucleic Acids Research
language:en
Short-container-title:

Author:

Vijaya Satya Ravi¹,Zavaljevski Nela¹,Reifman Jaques¹

Affiliation:

1. DoD Biotechnology High Performance Computing Software Applications Institute, Telemedicine and Advanced Technology Research Center, US Army Medical Research and Materiel Command, Fort Detrick, MD 21702, USA

Publisher

Oxford University Press (OUP)

Subject

Genetics

Link

http://academic.oup.com/nar/article-pdf/40/16/e127/25343186/gks425.pdf

Reference19 articles.

1. Mapping and quantifying mammalian transcriptomes by RNA-Seq;Mortazavi;Nat. Methods,2008

2. TopHat: discovering splice junctions with RNA-Seq;Trapnell;Bioinformatics,2009

3. Detection and removal of biases in the analysis of next-generation sequencing reads;Schwartz;PLoS One,2011

4. Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing;Heap;Hum. Mol. Genet.,2010

5. Allelic variation in human gene expression;Yan;Science,2002

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