Inferring direct DNA binding from ChIP-seq
Author:
Affiliation:
1. Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Queensland, Australia and 2 Department of Computer Science, Rhodes University, Grahamstown 6140, South Africa
Publisher
Oxford University Press (OUP)
Subject
Genetics
Link
http://academic.oup.com/nar/article-pdf/40/17/e128/25348192/gks433.pdf
Reference32 articles.
1. Evaluation of algorithm performance in ChIP-seq peak detection;Wilbanks;PLoS One,2010
2. Inferring transcription factor complexes from ChIP-seq data;Whitington;Nucleic Acids Res,2011
3. DREME: motif discovery in transcription factor ChIP-seq data;Bailey;Bioinformatics,2011
4. Information content and free energy in DNA–protein interactions;Stormo;J. Theor. Biol.,1998
5. Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data;Jothi;Nucleic Acids Res.,2008
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