Transcriptional output, cell-type densities, and normalization in spatial transcriptomics-Reference-Cited by-同舟云学术

Transcriptional output, cell-type densities, and normalization in spatial transcriptomics

Published:2020-06-23 Issue:11 Volume:12 Page:906-908
ISSN:1674-2788
Container-title:Journal of Molecular Cell Biology
language:en
Short-container-title:

Author:

Saiselet Manuel¹,Rodrigues-Vitória Joël¹,Tourneur Adrien¹,Craciun Ligia²,Spinette Alex²,Larsimont Denis²,Andry Guy³,Lundeberg Joakim⁴⁵,Maenhaut Carine¹,Detours Vincent¹

Affiliation:

1. IRIBHM, Université Libre de Bruxelles (ULB), 1070 Brussels, Belgium

2. Department of Pathology, Jules Bordet Institute, Université Libre de Bruxelles (ULB), 1000 Brussels, Belgium

3. Department of Head & Neck and Thoracic Surgery, Jules Bordet Institute, Université Libre de Bruxelles (ULB), 1000 Brussels, Belgium

4. Science for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden

5. Department of Bioengineering, Stanford University, Stanford, CA 94305-4245, USA

Funder

‘Les Amis de l’Institut Bordet’, Fondation Naets

Fondation Belge Contre le Cancer

FNRS

FNRS, J.R.V. by the Fonds National de la Recherche, Luxembourg

Publisher

Oxford University Press (OUP)

Subject

Cell Biology,Genetics,Molecular Biology,General Medicine

Link

http://academic.oup.com/jmcb/advance-article-pdf/doi/10.1093/jmcb/mjaa028/33420792/mjaa028.pdf

Reference10 articles.

1. Spatial detection of fetal marker genes expressed at low level in adult human heart tissue;Asp;Sci. Rep.,2017

2. Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity;Berglund;Nat. Commun.,2018

3. Intermediate filaments in normal thyrocytes: modulation of vimentin expression in primary cultures;Coclet;Mol. Cell. Endocrinol,1991

4. Single-cell RNA-seq denoising using a deep count autoencoder;Eraslan;Nat. Commun.,2019

5. Spatially resolved transcriptome profiling in model plant species;Giacomello;Nat. Plants,2017

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