NYUS.2: an Automated Machine Learning Prediction Model for the Large-scale Real-time Simulation of Grapevine Freezing Tolerance in North America

Author:

Wang Hongrui1,Moghe Gaurav D2,Kovaleski Al P3,Keller Markus4,Martinson Timothy E1,Wright A Harrison5,Franklin Jeffrey L5,Hébert-Haché Andréanne6,Provost Caroline6,Reinke Michael7,Atucha Amaya3,North Michael G3,Russo Jennifer P1,Helwi Pierre8,Centinari Michela9,Londo Jason P1

Affiliation:

1. Cornell University School of Integrative Plant Science, Horticulture Section, Cornell AgriTech, , Geneva, NY, 14456, USA

2. Cornell University School of Integrative Plant Science, Plant Biology Section, , Ithaca, NY, 14850, USA

3. University of Wisconsin-Madison Plant and Agroecosystem Sciences Department, , Madison, WI, 53706, USA

4. Washington State University Department of Viticulture and Enology, Irrigated Agriculture Research and Extension Center, , Prosser, WA, 99350, USA

5. Kentville Research and Development Centre, Agriculture and Agri-Food Canada , Kentville, Nova Scotia, B4N 1J5, Canada

6. Centre de Recherche Agroalimentaire de Mirabel, Mirabel , Québec, J7N 2X8, Canada

7. Michigan State University Southwest Michigan Research and Extension Center, , Benton Harbor, MI, 49022, USA

8. Martell & Co., 7 place Edouard Martell , Cognac, 16100, France

9. University Park Department of Plant Science, The Pennsylvania State University, , PA, 16802, USA

Abstract

Abstract Accurate and real-time monitoring of grapevine freezing tolerance is crucial for the sustainability of the grape industry in cool climate viticultural regions. However, on-site data is limited due to the complexity of measurement. Current prediction models underperform under diverse climate conditions, which limits the large-scale deployment of these methods. We combined grapevine freezing tolerance data from multiple regions in North America and generated a predictive model based on hourly temperature-derived features and cultivar features using AutoGluon, an automated machine learning engine. Feature importance was quantified by AutoGluon and SHAP value. The final model was evaluated and compared with previous models for its performance under different climate conditions. The final model achieved an overall 1.36 °C root-mean-square error during model testing and outperformed two previous models using three test cultivars at all testing regions. Two feature importance quantification methods identified five shared essential features. Detailed analysis of the features indicates that the model has adequately extracted some biological mechanisms during training. The final model, named NYUS.2, was deployed along with two previous models as an R shiny-based application in the 2022-2023 dormancy season, enabling large-scale and real-time simulation of grapevine freezing tolerance in North America for the first time.

Publisher

Oxford University Press (OUP)

Subject

Horticulture,Plant Science,Genetics,Biochemistry,Biotechnology

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