Harmonizing semantic annotations for computational models in biology

Author:

Neal Maxwell Lewis1ORCID,König Matthias2ORCID,Nickerson David3ORCID,Mısırlı Göksel4ORCID,Kalbasi Reza3,Dräger Andreas56ORCID,Atalag Koray3,Chelliah Vijayalakshmi7,Cooling Michael T3ORCID,Cook Daniel L89,Crook Sharon10ORCID,de Alba Miguel11,Friedman Samuel H12ORCID,Garny Alan3,Gennari John H9,Gleeson Padraig13ORCID,Golebiewski Martin14,Hucka Michael15ORCID,Juty Nick7,Myers Chris16,Olivier Brett G1718ORCID,Sauro Herbert M19,Scharm Martin20,Snoep Jacky L212223,Touré Vasundra24,Wipat Anil25,Wolkenhauer Olaf2026ORCID,Waltemath Dagmar20ORCID

Affiliation:

1. Seattle Children’s Research Institute, Center for Global Infectious Disease Research, Seattle, USA

2. Department of Biology, Humboldt-University Berlin, Institute for Theoretical Biology, Berlin, Germany

3. Auckland Bioengineering Institute, University of Auckland, Auckland, NZ

4. School of Computing and Mathematics, Keele University, Keele, UK

5. Computational Systems Biology of Infection and Antimicrobial-Resistant Pathogens, Center for Bioinformatics Tübingen (ZBIT), University of Tübingen, Tübingen, Germany

6. Department of Computer Science, University of Tübingen, Tübingen, Germany

7. European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK

8. Department of Physiology and Biophysics, University of Washington, Seattle, WA, USA

9. Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, USA

10. School of Mathematical and Statistical Sciences, Arizona State University, Tempe, USA

11. German Federal Institute for Risk Assessment, Berlin, Germany

12. Opto-Knowledge Systems, Inc. (OKSI), Torrance, CA, USA

13. Department of Neuroscience, Physiology and Pharmacology, University College London, London, UK

14. Heidelberg Institute for Theoretical Studies (HITS gGmbH), Heidelberg, Germany

15. Department of Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA

16. Department of Electrical and Computer Engineering, University of Utah, Salt Lake City, UT, USA

17. Systems Bioinformatics, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands

18. Modelling of Biological Processes, BioQUANT/COS, Heidelberg University, Germany

19. Department of Bioengineering, University of Washington, Seattle, WA, USA

20. Department of Systems Biology and Bioinformatics, University of Rostock, Rostock, Germany

21. Department of Biochemistry, Stellenbosch University, Matieland, South Africa

22. Department of Molecular Cell Physiology, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands

23. Manchester Institute for Biotechnology, University of Manchester, Manchester, UK

24. Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway

25. School of Computing Science, Newcastle University, Newcastle upon Tyne, UK

26. Stellenbosch Institute for Advanced Study (STIAS), Stellenbosch, South Africa

Funder

National Institutes of Health

German Federal Ministry of Education and Research

Aotearoa Foundation Fellowship

Medical Technologies Centre of Research Excellence

University of Auckland Faculty Research Development

European Commission

German Federal Ministry for Economic Affairs and Energy

Klaus Tschira Foundation

United States of America’s National Science Foundation

BE-Basic Foundation

Department of Science and Technology/National Research Foundation in South Africa

Biotechnology and Biological Sciences Research Council

Wellcome Trust

Norwegian University of Science and Technology

ERACoSysMed

Publisher

Oxford University Press (OUP)

Subject

Molecular Biology,Information Systems

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