Melanoma 2.0. Skin cancer as a paradigm for emerging diagnostic technologies, computational modelling and artificial intelligence

Author:

Vera Julio1ORCID,Lai Xin1ORCID,Baur Andreas1,Erdmann Michael1,Gupta Shailendra2,Guttà Cristiano3,Heinzerling Lucie14,Heppt Markus V1,Kazmierczak Philipp Maximilian5,Kunz Manfred6,Lischer Christopher1,Pützer Brigitte M7,Rehm Markus38,Ostalecki Christian1,Retzlaff Jimmy1,Witt Stephan9,Wolkenhauer Olaf2,Berking Carola1

Affiliation:

1. Department of Dermatology, FAU Erlangen-Nürnberg, Universitätsklinikum Erlangen, Comprehensive Cancer Center Erlangen and Deutsches Zentrum Immuntherapie (DZI) , 91054 Erlangen, Germany

2. Department of Systems Biology and Bioinformatics, Institute of Computer Science, University of Rostock , Rostock 18051, Germany

3. Institute of Cell Biology and Immunology, University of Stuttgart , 70569 Stuttgart, Germany

4. Department of Dermatology, LMU University Hospital , Munich, Germany

5. Department of Radiology, LMU University Hospital , Munich, Germany

6. Department of Dermatology, Venereology and Allergology, University of Leipzig , 04103 Leipzig, Germany

7. Institute of Experimental Gene Therapy and Cancer Research, Rostock University Medical Center , 18057 Rostock, Germany

8. Stuttgart Research Center Systems Biology, University of Stuttgart , 70569 Stuttgart, Germany

9. Theron Advisory Group , Berlin, Germany

Abstract

Abstract We live in an unprecedented time in oncology. We have accumulated samples and cases in cohorts larger and more complex than ever before. New technologies are available for quantifying solid or liquid samples at the molecular level. At the same time, we are now equipped with the computational power necessary to handle this enormous amount of quantitative data. Computational models are widely used helping us to substantiate and interpret data. Under the label of systems and precision medicine, we are putting all these developments together to improve and personalize the therapy of cancer. In this review, we use melanoma as a paradigm to present the successful application of these technologies but also to discuss possible future developments in patient care linked to them. Melanoma is a paradigmatic case for disruptive improvements in therapies, with a considerable number of metastatic melanoma patients benefiting from novel therapies. Nevertheless, a large proportion of patients does not respond to therapy or suffers from adverse events. Melanoma is an ideal case study to deploy advanced technologies not only due to the medical need but also to some intrinsic features of melanoma as a disease and the skin as an organ. From the perspective of data acquisition, the skin is the ideal organ due to its accessibility and suitability for many kinds of advanced imaging techniques. We put special emphasis on the necessity of computational strategies to integrate multiple sources of quantitative data describing the tumour at different scales and levels.

Funder

European Union's Horizon Research and Innovation Programme

German Federal Ministry of Education and Research

Deutsche Forschungsgemeinschaft

Germany's Excellence Strategy

Stuttgart Center for Simulation Science

Publisher

Oxford University Press (OUP)

Subject

Molecular Biology,Information Systems

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