DeepSite: protein-binding site predictor using 3D-convolutional neural networks

Author:

Jiménez J1,Doerr S1,Martínez-Rosell G1,Rose A S2,De Fabritiis G13

Affiliation:

1. Computational Biophysics Laboratory (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Biomedical Research Park (PRBB), Barcelona, Spain

2. San Diego Supercomputer Center, UC San Diego, MC 0505, 9500 Gilman Drive, La Jolla, CA, USA

3. ICREA, Barcelona, Spain

Funder

MINECO

FEDER

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Reference30 articles.

1. Deep learning for computational biology;Angermueller;Mol. Syst. Biol,2016

2. Practical recommendations for gradient-based training of deep architectures;Bengio;Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),2012

3. Fast prediction and visualization of protein binding pockets with PASS;Brady;J. Comput. Aid. Mol. Des,2000

4. Coefficient kappa: some uses, misuses, and alternatives;Brennan,1981

Cited by 476 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献

1. Language models can identify enzymatic binding sites in protein sequences;Computational and Structural Biotechnology Journal;2024-12

2. Databases of ligand-binding pockets and protein-ligand interactions;Computational and Structural Biotechnology Journal;2024-12

3. Structure-based protein and small molecule generation using EGNN and diffusion models: A comprehensive review;Computational and Structural Biotechnology Journal;2024-12

4. Structural and functional prediction, evaluation, and validation in the post-sequencing era;Computational and Structural Biotechnology Journal;2024-12

5. Advances in Deep Learning Assisted Drug Discovery Methods: A Self-review;Current Bioinformatics;2024-12

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3