The Feature-Viewer: a visualization tool for positional annotations on a sequence-Reference-Cited by-同舟云学术

The Feature-Viewer: a visualization tool for positional annotations on a sequence

Published:2020-01-27 Issue:10 Volume:36 Page:3244-3245
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Paladin Lisanna¹^ORCID,Schaeffer Mathieu²,Gaudet Pascale²^ORCID,Zahn-Zabal Monique²,Michel Pierre-André²,Piovesan Damiano¹,Tosatto Silvio C E¹³^ORCID,Bairoch Amos²

Affiliation:

1. Department of Biomedical Sciences, University of Padua, Padova 35121, Italy

2. CALIPHO Group, Swiss Institute of Bioinformatics, University of Geneva, Geneva 1206, Switzerland

3. CNR Institute of Neuroscience, Padova 35121, Italy

Abstract

Abstract Summary The Feature-Viewer is a lightweight library for the visualization of biological data mapped to a protein or nucleotide sequence. It is designed for ease of use while allowing for a full customization. The library is already used by several biological data resources and allows intuitive visual mapping of a full spectra of sequence features for different usages. Availability and implementation The Feature-Viewer is open source, compatible with state-of-the-art development technologies and responsive, also for mobile viewing. Documentation and usage examples are available online.

Funder

European Union’s Horizon 2020 research and innovation program

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaa055/32517903/btaa055.pdf

Reference10 articles.

1. D3 data-driven documents;Bostock;IEEE Trans. Vis. Comput. Graph,2011

2. DisProt: intrinsic protein disorder annotation in 2020;Hatos;Nucleic Acids Res,2019

3. Mason: a JavaScript web site widget for visualizing and comparing annotated features in nucleotide or protein sequences;Jaschob;BMC Res. Notes,2015

4. COSMIC-3D provides structural perspectives on cancer genetics for drug discovery;Jubb;Nat. Genet,2018

5. Visualization of protein sequence features using JavaScript and SVG with pViz.js;Mukhyala;Bioinformatics,2014

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