BMDx: a graphical Shiny application to perform Benchmark Dose analysis for transcriptomics data
Author:
Affiliation:
1. Faculty of Medicine and Health Technology, Tampere University, Tampere 33100, Finland
2. BioMediTech Institute, Tampere University, Tampere 33100, Finland
3. Institute of Biotechnology, University of Helsinki, Helsinki 00014, Finland
Abstract
Funder
Academy of Finland
European Unionur Horizon 2020 research and innovation programme
NanoinformaTIX
Publisher
Oxford University Press (OUP)
Subject
Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability
Link
http://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaa030/32219787/btaa030.pdf
Reference10 articles.
1. Introduction to benchmark dose methods and us EPA’s benchmark dose software (BMDS) version 2.1.1;Davis;Toxicol. Appl. Pharmacol,2011
2. Benchmark dose (BMD) modeling: current practice, issues, and challenges;Haber;Crit. Rev. Toxicol,2018
3. Analysis of dose–response effects on gene expression data with comparison of two microarray platforms;Hu;Bioinformatics,2005
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