Affiliation:
1. FAFU-UCR Joint Center for Horticultural Biology and Metabolomics, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University , Fuzhou, 350002, China
2. Life Science Core Facilities, Weizmann Institute of Science , Rehovot, 76100, Israel
Abstract
Abstract
Motivation
Metabolomics, as an essential tool in systems biology, is now widely accessible to researchers of all levels. Yet challenges remain in data analysis and result interpretation. To address these challenges, we introduced MetaboReport, a versatile and interactive web app that simplifies metabolomics experiment design, data preprocessing, exploration, statistical analysis, visualization, and reporting.
Results
MetaboReport produces a comprehensive HTML report, including project details, an introduction, interactive plots and tables, statistical results and an in-depth explanations and interpretation of the results. MetaboReport is particularly tailored for research labs and metabolomics core facilities that provide metabolomics services, allowing them to efficiently manage and document different metabolomics projects, and effectively report the metabolomics results to users.
Availability and implementation
MetaboReport is freely accessible on https://metaboreport.com, with source code available on GitHub (https://github.com/YonghuiDong/MetReport). Alternatively, users can install MetaboReport as a standalone desktop app (https://metaboreport.sourceforge.io).
Funder
Vera and John Schwartz Family Center for Metabolic Biology
Weizmann Institute of Science, Rehovot, Israel
Publisher
Oxford University Press (OUP)