SpliceRover: interpretable convolutional neural networks for improved splice site prediction-Reference-Cited by-同舟云学术

SpliceRover: interpretable convolutional neural networks for improved splice site prediction

Published:2018-06-21 Issue:24 Volume:34 Page:4180-4188
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Zuallaert Jasper¹²^ORCID,Godin Fréderic²,Kim Mijung¹²,Soete Arne³⁴,Saeys Yvan⁴⁵,De Neve Wesley¹²

Affiliation:

1. Center for Biotech Data Science, Department of Environmental Technology, Food Technology and Molecular Biotechnology, Ghent University Global Campus, Songdo, Incheon, South Korea

2. IDLab, Department for Electronics and Information Systems, Ghent University, Ghent, Belgium

3. Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium

4. Data Mining and Modeling for Biomedicine, VIB Inflammation Research Center, Ghent, Belgium

5. Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent, Belgium

Funder

Ghent University Global Campus

Ghent University

Flanders Innovation & Entrepreneurship

VLAIO

Fund for Scientific Research-Flanders

FWO-Flanders

Marylou Ingram Scholar

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/24/4180/27088685/bty497.pdf

Reference31 articles.

1. Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning;Alipanahi;Nat. Biotechnol,2015

2. Differential GC content between exons and introns establishes distinct strategies of splice-site recognition;Amit;Cell Rep,2012

3. On pixel-wise explanations for non-linear classifier decisions by layer-wise relevance propagation;Bach;PLoS One,2015

4. Effective DNA encoding for splice site prediction using SVM;Bari;MATCH Commun. Math. Comput. Chem,2012

5. Splicedb: database of canonical and non-canonical mammalian splice sites;Burset;Nucleic Acids Res,2001

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