Smoldyn: particle-based simulation with rule-based modeling, improved molecular interaction and a library interface-Reference-Cited by-同舟云学术

Smoldyn: particle-based simulation with rule-based modeling, improved molecular interaction and a library interface

Published:2016-12-06 Issue:5 Volume:33 Page:710-717
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Andrews Steven S¹²

Affiliation:

1. Basic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA

2. Isaac Newton Institute for Mathematical Sciences, Cambridge, UK

Funder

Simons Foundation

EPSRC

Isaac Newton Institute

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/33/5/710/25148518/btw700.pdf

Reference60 articles.

1. Accurate particle-based simulation of adsorption, desorption and partial transmission;Andrews;Phys. Biol,2009

2. Spatial and Stochastic Cellular Modeling with the Smoldyn Simulator

3. Rule-based modeling using wildcards;Andrews;Methods Mol. Biol,2016

4. Stochastic simulation of chemical reactions with spatial resolution and single molecule detail;Andrews;Phys. Biol,2004

5. Stochastic Models of Biological Processes

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