Nextstrain: real-time tracking of pathogen evolution

Author:

Hadfield James1,Megill Colin1,Bell Sidney M12,Huddleston John12,Potter Barney1,Callender Charlton1,Sagulenko Pavel3,Bedford Trevor1,Neher Richard A345

Affiliation:

1. Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA

2. Molecular and Cellular Biology Program, University of Washington, Seattle, WA, USA

3. Max Planck Institute for Developmental Biology, Tübingen, Germany

4. Biozentrum, University of Basel, Basel, Switzerland

5. SIB Swiss Institute of Bioinformatics, Basel, Switzerland

Funder

Open Science Prize

NSF

SMB

ERC

RAN

NIH

Pew Biomedical Scholar

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Reference10 articles.

1. The application of genomics to tracing bacterial pathogen transmission;Croucher;Curr. Opin. Microbiol,2015

2. Three mutations switch H7N9 influenza to human-type receptor specificity;de Vries;PLoS Pathog,2017

3. Epidemic establishment and cryptic transmission of Zika virus in Brazil and the Americas;Faria;Nature,2017

4. Epidemiology of human infections with avian influenza A(H7N9) virus in China;Li;N. Engl. J. Med,2014

5. nextflu: real-time tracking of seasonal influenza virus evolution in humans;Neher;Bioinformatics,2015

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